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12
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log2FoldChange value is way too different when compared with counts(dds)
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1
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77
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How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
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3
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4
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Help with error using camera() in limma
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Padj "NA" with thousands of low count although the raw read counts are quite large
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putting my own expression data in deseq2
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3
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updated 5 days ago by 65k • written 5 days ago by • 0
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5 days ago glaciya2018 • 0
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2
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127
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6 days ago • updated 4 days ago winwater0928 • 0
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metaMSdata
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962
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124
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4
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194
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109
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0
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5
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0
votes
2
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183
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6
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12
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13
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353
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9 days ago • updated 6 days ago fernanda.backsouza ▴ 10
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9 days ago vaxahey107 • 0
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Why p value inconsistent when using different number of pathway score?
limma
10 days ago • updated 2 hours ago Chris • 0
0
votes
0
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I am trying to detect alternative splicing.
ASpli
10 days ago Sebashish • 0
45,594 results • Page 1 of 912
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Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma by James W. MacDonald 65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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