0
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0
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1.4k
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getsex function error.
QualityControl methylationArrayAnalysis
3.9 years ago zusman • 0
0
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0
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1.1k
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Pairwise alignment results with the original coordinates.
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3.9 years ago Charles Plessy ▴ 180
2
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6
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3.9k
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Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 3.9 years ago by ▴ 70 • written 3.9 years ago by • 0
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0
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1.1k
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How do I resolve "cannot add bindings to a locked environment" when working with setRefClass in R
CMD setRefClass
3.9 years ago johnston_Kyle • 0
2
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4
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2.0k
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How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
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3.9 years ago Jojo • 0
0
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9
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clarification about bumphunter value output
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updated 2.6 years ago by • 0 • written 7.9 years ago by • 0
2
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16
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MotifDb missing some FlyFactor Motifs
Motifdb
updated 3.9 years ago by • 0 • written 5.6 years ago by ▴ 10
3
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6
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filterbyexp() in edgeR
edgeR
updated 15 months ago by ▴ 900 • written 3.9 years ago by ▴ 10
0
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1
reply
2.0k
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Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
3
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1
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936
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How to solve the "tilted tail" after DESeq2 normalization.
DESeq2
updated 3.9 years ago by ★ 5.0k • written 3.9 years ago by ▴ 20
0
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2
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Extend comparisons between two groups to more groups in DESEQ2
edgeR DEGs DESEQ2 RNASeqData
3.9 years ago Raito92 ▴ 60
5
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6
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2.2k
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How to get 3/4 peak overlap in DiffBind?
DiffBind
3.9 years ago Krista • 0
6
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2
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1.9k
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strand-aware GRanges shift
GenomicRanges
updated 3.9 years ago by ★ 1.6k • written 3.9 years ago by ▴ 10
0
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4
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How do you get averages of each group in Limma output
RNASeq limma
3.9 years ago Matthew • 0
0
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18
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5.9k
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Indexing FASTA file using RSamtools
Rsamtools GenomicFeatures
3.9 years ago rbenel ▴ 50
0
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0
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730
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Error in DEqMS proteomics analysis
DEqMS R DifferentialExpression
3.9 years ago Mrinal.singh06 • 0
0
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0
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Read Cellranger outputs in R, combine as SingleCellExperiment
ReadInR Cellranger GEX+Features+VDJ
3.9 years ago gregoire.destreel • 0
0
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1
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1.1k
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tximport
salmon tximport
updated 3.9 years ago by 43k • written 3.9 years ago by • 0
0
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1
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2.1k
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'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig RNASeqData
3.9 years ago bas_work ▴ 30
0
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6
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5.5k
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Performing simple pairwise comparisons in DESEQ2
edgeR DEG RNASeq DESEQ2
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 60
4
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11
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How to get all possible comparisons in DiffBind
diffbind
updated 3.9 years ago by ★ 5.2k • written 7.0 years ago by ▴ 10
4
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3
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1.8k
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Limma/voom analysis of time-series data (with only 1 condition)
limma DifferentialExpression
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
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3
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1.6k
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MEDIPS - error using MEDIPS.CpGenrich
MEDIPS
updated 11 months ago by • 0 • written 3.9 years ago by • 0
0
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0
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1.1k
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WGCNA with large Methylation matrix
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3.9 years ago Lorenzo • 0
0
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7
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3.0k
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dba.count() error when re-centering peaks
DiffBind
updated 3.4 years ago by • 0 • written 3.9 years ago by • 0
0
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1
reply
1.8k
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Aberrant number of cells
CellBarcode DropletUtils emptyDrops() Cellranger scRNAseq
updated 3.7 years ago by ▴ 20 • written 3.9 years ago by • 0
0
votes
2
replies
982
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`dbs.all` object in the vignette
DiffBind
4.0 years ago • updated 3.9 years ago Mark • 0
0
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1
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2.0k
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How to do functional analysis on differentially expressed gene list from RNA-seq data?
RNA-sequencing KEGG GO
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
4
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1
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1.7k
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DEGs from lfcshrink() and results()
lfcshrink DESeq2
updated 3.9 years ago by ★ 5.0k • written 4.0 years ago by ▴ 10
0
votes
1
reply
1.1k
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DESeq2 2x3 design contrast question
DESeq2 contrasts
updated 3.9 years ago by 43k • written 4.0 years ago by • 0
0
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3
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How to get DESeq2 results in large count matix files?
DESeq2 BiocParallel MulticoreParam
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 20
0
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0
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1.2k
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Job: 12 Doctoral Candidates f/m/d Plant Proteomics, Bioinformatics and Biology
JobPosting
3.9 years ago mengchen18 • 0
3
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5
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3.7k
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Plot PC1 and PC4 in plotPCA function
DESeq2 plotPCA
updated 19 months ago by • 0 • written 3.9 years ago by • 0
2
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3
replies
6.4k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.7 years ago by • 0 • written 4.0 years ago by • 0
0
votes
4
replies
1.9k
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Multi-factor paired RNAseq differential analysis with DEseq2
DESeq2 RNASeq
updated 4.0 years ago by ★ 1.4k • written 4.0 years ago by • 0
1
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2
replies
1.1k
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Unable to install Rhtslib in R-4.1.1
**make_error
4.0 years ago cf2209 • 0
2
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3
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6.0k
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fgsea not downloading due to new r version. Is there a way around this?
r fgsea
4.0 years ago amir.khan • 0
0
votes
1
reply
965
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MATRIXEQTL: Error during load SNPMATRIX.txt in MATRIXEQTL
MatrixEQTL
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
1
vote
1
reply
1.7k
views
Swish with more than two conditions. Add support for contrasts?
tximeta DESeq2 swish fishpond
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 20
0
votes
0
replies
718
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Bonferroni & Barplot
#plot #bonferroni #barplot #ggplot2 #pvalue
4.0 years ago devbhavin20 • 0
0
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0
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1.2k
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using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
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4.0 years ago Amandeep • 0
1
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6
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3.9k
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dba.count error
DiffBind
updated 3.9 years ago by ★ 5.2k • written 4.0 years ago by ▴ 10
0
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1
reply
1.0k
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Problem to execute a rowttest.
rowttests
updated 4.0 years ago by 68k • written 4.0 years ago by • 0
0
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2
replies
1.4k
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Simple subject extraction question with biostrings
Biostrings
4.0 years ago James • 0
0
votes
0
replies
1.3k
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
4.0 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
729
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DGIdb service not available
rDGIdb
4.0 years ago DannyM • 0
0
votes
1
reply
1.0k
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adjacency matrix in WGCNA returns NA
Coexpressionnetwork WGCNA
written 4.0 years ago by • 0
1
vote
3
replies
2.1k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
4.0 years ago aedavids ▴ 20
1
vote
0
replies
1.3k
views
Job: Scientist, Computational Biology at Denali Therapeutics in South San Francisco, CA, USA
JobPosting
4.0 years ago Thomas ▴ 10
9
votes
14
replies
10k
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Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 18 months ago by 4.3k • written 4.0 years ago by ▴ 40
46,712 results • Page 100 of 935
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