8
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6
replies
9.2k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 19 months ago by ▴ 30 • written 6.6 years ago by ▴ 180
0
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0
replies
670
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
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19 months ago Maria Doyle ▴ 110
0
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6
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Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
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19 months ago atan • 0
5
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6
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5.0k
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Not able to install any Bioconductor 3.18 package [unable to access index]
Install
updated 19 months ago by ▴ 150 • written 19 months ago by ▴ 140
2
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2
replies
1.1k
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unable to access bioconductor packages - qvalue installation failed...
Install
updated 19 months ago by 4.2k • written 19 months ago by ▴ 10
2
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2
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1.3k
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Get gene symbols for a set of hg19 coordinates
annotation hg19
19 months ago pcantalupo ▴ 10
0
votes
0
replies
740
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Job: Bioinformatics MSc University of York
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19 months ago Daphne • 0
2
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4
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1.6k
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Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
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updated 19 months ago by 68k • written 19 months ago by ▴ 20
1
vote
3
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4.5k
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WGNCA kME vs. kIM
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updated 19 months ago by • 0 • written 10.3 years ago by ▴ 30
0
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3
replies
1.2k
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pathview error
KEGGgraph KEGG
updated 19 months ago by ★ 4.1k • written 19 months ago by • 0
1
vote
8
replies
1.4k
views
Slightly different count plots from R and spreadsheet
DESeq2 ggplot2
19 months ago boczniak767 ▴ 740
0
votes
1
reply
863
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
19 months ago • updated 18 months ago abhisek001 • 0
3
votes
2
replies
1.3k
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
19 months ago mohammedtoufiq91 ▴ 10
4
votes
3
replies
1.2k
views
recount3 problem downloading data from source sra
recount3
updated 19 months ago by ★ 1.1k • written 19 months ago by ▴ 10
0
votes
6
replies
1.7k
views
Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 19 months ago by • 0 • written 19 months ago by ▴ 10
1
vote
1
reply
726
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub ExperimentHub
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
0
replies
421
views
Conditional analysis
GENESIS
19 months ago SuperDad • 0
0
votes
0
replies
1.1k
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
19 months ago Raghad • 0
0
votes
2
replies
1.1k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
19 months ago landenshanie ▴ 40
2
votes
10
replies
1.7k
views
How to run allelic imbalance in apeglm
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19 months ago • updated 18 months ago euge.eugenio ▴ 20
0
votes
1
reply
1.6k
views
ERROR; return code from pthread_create() is 22
affy
updated 19 months ago by 68k • written 19 months ago by • 0
1
vote
3
replies
1.0k
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 19 months ago by 68k • written 19 months ago by ▴ 740
0
votes
0
replies
650
views
Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
19 months ago pierre.devillemereuil • 0
1
vote
2
replies
826
views
Subsetting RNAseq data | voomaByGroup()
limma
19 months ago Anna • 0
0
votes
0
replies
12
views
Spam: Understanding Laser Hair Removal?
healthyControlsPresenceChecker
19 months ago shahrozimmac 0
0
votes
0
replies
457
views
Processing of curatedmetagenomics
curatedMetagenomicData
19 months ago Edward • 0
7
votes
6
replies
1.7k
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
written 20 months ago by • 0
0
votes
5
replies
1.7k
views
all variables in design formula must be columns in colData (Deseq2) error
BatchQC batchinDeseq2. columnsincolData.
19 months ago Galina • 0
0
votes
0
replies
667
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq scRNAseq
19 months ago Bibi • 0
0
votes
6
replies
1.6k
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
19 months ago Ken C • 0
2
votes
4
replies
1.1k
views
DESeq2- Mysterious interaction suppresses DEGs
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updated 19 months ago by 43k • written 19 months ago by • 0
0
votes
0
replies
586
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
19 months ago Abiologist • 0
0
votes
3
replies
1.5k
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STRINGdb : error with string_db$plot_network()
STRINGdb
updated 19 months ago by ▴ 110 • written 19 months ago by • 0
0
votes
2
replies
784
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DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
19 months ago makala • 0
2
votes
2
replies
1.3k
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
19 months ago Matthew Thornton ▴ 390
0
votes
0
replies
560
views
determine k during RUVSeq
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19 months ago Ειρήνη • 0
2
votes
3
replies
1.2k
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Problem installing ChAMP on a MacBook
ChAMP
updated 19 months ago by 4.2k • written 19 months ago by • 0
0
votes
1
reply
756
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ReactomeGSA for RNASeq
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updated 16 months ago by ▴ 20 • written 19 months ago by • 0
0
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0
replies
16
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Spam: Unveiling Unmatched Best Custom Patches
SIMAT
19 months ago oliverelijhan 0
0
votes
0
replies
562
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ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
19 months ago Anton01 • 0
0
votes
0
replies
529
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO KEGG gage pathview
19 months ago danalvoronov ▴ 10
0
votes
0
replies
551
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query regarding how to apply WGCNA on replicates
replicatesRNAseq WGCNA
19 months ago k200987 • 0
3
votes
5
replies
1.5k
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
19 months ago Patadù ▴ 20
0
votes
4
replies
1.5k
views
error running enricher from clusterprofiler
clusterProfiler cluster
19 months ago Yael • 0
3
votes
3
replies
1.2k
views
How to correctly adjust for gender in edgeR
design glm edgeR
updated 19 months ago by 53k • written 19 months ago by • 0
2
votes
1
reply
816
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How to design DEXSeq formula for multiple variables
DEXSeq
19 months ago • updated 18 months ago Sara • 0
4
votes
9
replies
1.4k
views
Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 19 months ago by ★ 5.0k • written 19 months ago by • 0
0
votes
0
replies
541
views
Difference in Contrast in DiffBind
DiffBind
19 months ago user_bioinfo • 0
1
vote
2
replies
1.0k
views
Erroe when using makeOrgPackageFromNCBI()
AnnotationForge
19 months ago Patadù ▴ 20
10
votes
11
replies
3.3k
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SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 19 months ago by • 0 • written 8.4 years ago by ▴ 80
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
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