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2
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392
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CombineArrays for EPIC and EPIC V2
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6 weeks ago • updated 18 days ago Kim • 0
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limma for gene expression analysis with big and unbalanced sample size
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updated 21 days ago by • 0 • written 8.0 years ago by • 0
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288
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error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
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14 days ago • updated 8 days ago zzrammal • 0
1
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2
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Subsetting RNAseq data | voomaByGroup()
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3 days ago • updated 1 day ago Anna • 0
0
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Problem finding certain variables when importing a public database GSE73103
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8 days ago • updated 7 days ago Yveto • 0
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DESeq2 v1.35.0
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updated 19 days ago by 42k • written 19 days ago by • 0
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using WGCNA, positive or negative corrlation between genes composing modules.
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updated 6 days ago by • 0 • written 18 months ago by • 0
1
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Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
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12 days ago • updated 11 days ago Dylan.Sheerin • 0
1
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Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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20 days ago • updated 19 days ago Yveto • 0
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2
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4 weeks ago • updated 29 days ago catv • 0
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2
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updated 7 days ago by ▴ 10 • written 9 days ago by • 0
1
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1
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68
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Control group between 2 batches have different expression in RNAseq data
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updated 1 day ago by 66k • written 1 day ago by • 0
1
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1
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168
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How to remove batch effect to combine RNAseq data from 2 different experiments?
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0
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1
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122
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Recovering my account credentials on Bioconductor
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
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7 hours ago minardsmitha ▴ 10
2
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1
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150
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Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 15 days ago by 42k • written 15 days ago by ▴ 70
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1
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ENCORI or starBase : ceRNA data retrieval using Web API and curl
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Documenting resources in an `ExperimentHub` package?
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Fold change calculation in Diffbind vs. DESEQ2?
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
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Version 3.15 S4Vectors packages are missing
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ATACseq merge peaks
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updated 25 days ago by ★ 4.1k • written 27 days ago by • 0
1
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Dominance Index for Shotgun Metagenomics Data
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updated 25 days ago by ▴ 40 • written 25 days ago by ★ 1.5k
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Gene-by-sample covariates in limma
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updated 19 days ago by 50k • written 19 days ago by • 0
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normalization using Deseq2
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minfi latest update for EPIC V2 chip
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updated 14 days ago by 66k • written 14 days ago by • 0
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1
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137
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Cannabis OrgDb
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updated 28 days ago by 66k • written 28 days ago by ▴ 10
1
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1
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41
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Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
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updated 10 hours ago by 66k • written 11 hours ago by ▴ 10
0
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1
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168
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DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
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updated 27 days ago by 42k • written 27 days ago by • 0
2
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1
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92
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How to design DEXSeq formula for multiple variables
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updated 6 days ago by ★ 1.9k • written 8 days ago by • 0
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1
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updated 8 days ago by ★ 4.0k • written 9 days ago by • 0
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updated 11 days ago by ★ 4.1k • written 11 days ago by • 0
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ERROR; return code from pthread_create() is 22
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updated 1 day ago by 66k • written 3 days ago by • 0
0
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How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
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updated 21 days ago by 66k • written 21 days ago by • 0
3
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330
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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
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normalization across different species for DESeq2 analysis
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DSS CpG coverage threshold
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recount3
updated 6 hours ago by ★ 1.0k • written 9 hours ago by • 0
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NEED FOR NESSASORY HELP
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0
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How to arrange multiple plots into one page in NOISeq?
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Handling multiple differential expression comparisons
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updated 16 days ago by 42k • written 18 days ago by ▴ 10
0
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1
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142
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Padj "NA" with thousands of low count although the raw read counts are quite large
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updated 21 days ago by 42k • written 22 days ago by • 0
3
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1
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157
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How to save the DEXSeq results
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updated 15 days ago by 42k • written 15 days ago by • 0
0
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FDR via q-value
qvalue
updated 29 days ago by 66k • written 4 weeks ago by • 0
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1
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146
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
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1
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putting my own expression data in deseq2
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updated 21 days ago by ★ 4.1k • written 21 days ago by • 0
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0
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flowStats for CyTOF
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19 days ago tholmes • 0
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News: Interested in the analysis of Spatial Omics data?
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28 days ago info ▴ 10
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Treeio as.treedata function seq lenght error
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13 days ago nromerov • 0
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0
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need help with Diffbind multiple groups
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15 days ago Dinesh • 0
178 results • Page 3 of 4
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Thank you so much!
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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