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10
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1.8k
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Extremely Big Number of Differences from Multi-level Design in RNA-seq Analysis by both Limma and DESeq2 - Something wrong with the design?
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updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 10
1
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7
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getting error with DEseq2
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9.7 years ago Nemo ▴ 80
0
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1
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994
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genome searching with Biostrings and the BSgenome data packages
biostrings
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
0
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Advice on normalization with metagenomics data
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9.7 years ago David ▴ 860
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30
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create design matrix when 2 groups of gene-expression data
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10.0 years ago • updated 9.7 years ago mheydarpour ▴ 10
0
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1
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1.9k
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How to identify the microarray annotation library automatically from GEO study ID?
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updated 9.7 years ago by 68k • written 9.7 years ago by • 0
0
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1
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Problem loading minfi on macOS
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updated 9.7 years ago by ★ 6.5k • written 9.7 years ago by • 0
6
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6
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genefilter filtered out 60% of the original genes?
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updated 9.7 years ago by ▴ 180 • written 9.7 years ago by ▴ 20
0
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1
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Possible bug in ConsensusSequence
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updated 9.7 years ago by ▴ 10 • written 9.7 years ago by • 0
0
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3
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GSVA (1.18.0) segfaulting on small dataset
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updated 9.7 years ago by ★ 3.4k • written 9.7 years ago by ▴ 120
1
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3
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DESeq2 robust fpkm error with tximport
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updated 9.7 years ago by 43k • written 9.7 years ago by • 0
0
votes
0
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normalizing gene expression data with TCGAbiolinks
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9.7 years ago Fernando • 0
1
vote
1
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1.8k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
9.7 years ago Lucy • 0
1
vote
2
replies
1.8k
views
mRNA start used instead of gene start in makeTxDbFromGFF
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updated 9.7 years ago by 16k • written 9.7 years ago by ▴ 80
2
votes
1
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1.4k
views
Error in score() function on pairwiseAlignment()
biostrings pairwisealignment
updated 9.7 years ago by 4.2k • written 9.7 years ago by • 0
3
votes
5
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9.2k
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Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
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10.1 years ago • updated 9.7 years ago dvillarlozano ▴ 10
0
votes
5
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2.6k
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arrayExpress: problem running code from the vignette
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9.7 years ago kevin.rue ▴ 350
1
vote
5
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openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 9.7 years ago by • 0 • written 9.7 years ago by ▴ 30
0
votes
1
reply
1.3k
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Error in value[[3L]](cond) : Request to BioMart web service failed.
biomart
9.7 years ago methylUser ▴ 10
1
vote
3
replies
1.5k
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csaw: dumpPE on multiple bam files.
csaw dumpPE windowCounts
10.1 years ago • updated 9.7 years ago asif.zubair • 0
3
votes
0
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News: Bioconductor 3.3 is released
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9.7 years ago Dan Tenenbaum ★ 8.2k
4
votes
2
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1.8k
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distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures txdb maketxdbfromgff metadata
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 80
0
votes
3
replies
975
views
Proper Design Matrix for Paired Samples where endpoint has multiple samples that pair to the same start sample
edger design matrix
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
1
vote
1
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1.2k
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csaw: post clustering description of regions
csaw mergeWindows
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
3
votes
2
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csaw: when not to dedup
csaw dedup
updated 4.4 years ago by • 0 • written 9.7 years ago by • 0
1
vote
5
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5.7k
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Heatmaps with replicates or triplicate data sets with counts to EdgeR, DESeq, or DESeq2
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updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 10
0
votes
1
reply
3.0k
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reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by • 0
0
votes
3
replies
3.2k
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Error from readCufflinks
cummerbund
updated 9.7 years ago by • 0 • written 11.1 years ago by • 0
2
votes
2
replies
2.2k
views
Error in sqliteSendQuery(con, statement, bind.data) : error in statement: disk I/O error during HPO.db installation
R
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 10
3
votes
2
replies
1.1k
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How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
limma
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 420
0
votes
5
replies
2.7k
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DESeq2 plotCount question
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updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 10
0
votes
0
replies
1.1k
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dexseq_prepare_annotation gives an empty gff file
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9.7 years ago sakura.nussbaum ▴ 10
2
votes
3
replies
1.9k
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comBat/SVA with no "variable of interest" and two batches
combat sva covariates
updated 9.7 years ago by ▴ 420 • written 9.7 years ago by • 0
1
vote
4
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1.5k
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Baseline comparison using "Comparisons both between and within subjects"
edgeR
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 10
0
votes
1
reply
742
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residuals.MArrayLM() ignores 'design' argument.
limma
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 50
1
vote
6
replies
2.7k
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Combining .idat and GEO data sets in minfi
minfi
9.7 years ago matts • 0
6
votes
2
replies
5.9k
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help with clusterProfiler enricher function
clusterprofiler
9.7 years ago naholi.alejandri ▴ 50
21
votes
24
replies
15k
views
Problem with biomart's listMarts function
biomart bug
updated 9.7 years ago by ▴ 470 • written 10.2 years ago by ★ 2.1k
0
votes
1
reply
1.5k
views
Lumi error in importMethylIDAT
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updated 9.7 years ago by 68k • written 9.7 years ago by • 0
1
vote
4
replies
3.9k
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Problem retrieving graphics in clusterprofiler
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9.7 years ago José Luis Lavín ▴ 10
0
votes
2
replies
1.4k
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MethylPipe pvalue output
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updated 9.7 years ago by ▴ 10 • written 9.7 years ago by • 0
1
vote
2
replies
1.7k
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Normalized count or Count data for ToPASeq package
rnaseq Topaseq
9.7 years ago saamar.rajput • 0
0
votes
1
reply
921
views
Installing mzMatch - problems with Rcpp versions
software error
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
3
votes
1
reply
1.1k
views
Detection of methylated regions from MeDIP data using csaw
csaw medip-chip
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
0
votes
0
replies
1.8k
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Job: Bioinformatics position at the Department of Genetics, Stanford, California
next-generation sequencing rna-seq chip-seq single cell Job
9.7 years ago Katja Hebestreit ▴ 130
0
votes
3
replies
1.8k
views
biomaRt query Error "no upstream flank found" only for human
biomaRt Query ERROR biomart Filter upstream_flank NOT FOUND
9.7 years ago Ddaubentonia • 0
3
votes
3
replies
1.1k
views
edgeR: shall I fit the glm model separately for different cell lines?
edger
updated 9.7 years ago by ★ 7.9k • written 9.7 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Error in processAmplicons "there are duplicate hairpin sequences"
processamplicons
9.7 years ago lucia.caceres • 0
1
vote
5
replies
1.7k
views
trying to change length of barcode
processamplicons edger barcode
9.7 years ago lucia.caceres • 0
0
votes
2
replies
1.9k
views
volcano plot in Limma
limma volcanoplot
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 10
46,706 results • Page 397 of 935
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