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7
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4.4k
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2.3 years ago NiKo ▴ 10
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2.3 years ago Jon • 0
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Advice needed on package using online databases (fails CHECK when database is down)
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updated 2.3 years ago by 4.3k • written 2.3 years ago by ▴ 30
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2.3 years ago mch • 0
1
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3
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Error in Gviz (actually, rtracklayer) | IdeogramTrack
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biomaRt not working - lazy table error
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Mfuzz package loading issues
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2.3 years ago Jon • 0
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2
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Can you help me generate a Bsgenome of the fusion genome of a human and HIV-1 virus?
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2.3 years ago 13273976287 • 0
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Error when trying to create a heatmap with DESeq2
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DecideTest vs topTAGs in edgeR
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How to calculate CDS start and End per transcript from GTF file
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2.3 years ago rohitsatyam102 ▴ 20
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2.3 years ago rohitsatyam102 ▴ 20
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object HPOGENE is not exported by namespace HPO.db
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determine if R package or it's dependencies functionality require internet access
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updated 2.3 years ago by 53k • written 2.3 years ago by • 0
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2.3 years ago feifan • 0
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ChIPpeakAnno annotatePeakInBatch output
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2.3 years ago ilaria.maurizio • 0
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6
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DESeq2 Normalization with 4 Groups
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How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
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proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
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2.3 years ago Chris • 0
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error while running DMRcate
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How to correct for known and surrogate variables in DESeq2?
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DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
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Problems when running GDC_prepare in R
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2.3 years ago leon • 0
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rtracklayer error for browserSession UCSC
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is Dada2 biased toward a particular sequence ?
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2.3 years ago Sara • 0
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DESeq2: how could the lower mean abundance treatment show a positive and significant LFC?
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2.3 years ago Karthik • 0
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DESeq2 Error in Results Contrast and ResultsNames
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2.3 years ago Xinqi • 0
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2.3 years ago Thon • 0
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46,758 results • Page 41 of 936
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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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