Bioconductor Forum

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BatchEffect edgeR

updated 2.2 years ago by ATpoint ★ 5.0k • written 2.2 years ago by Giuseppe • 0

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HTSeqGenie

2.2 years ago zh9118 • 0

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ChIPpeakAnno ChIPSeq MotifDiscovery

2.2 years ago franciscrick41 • 0

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9

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RUVSeq sva limma

updated 20 months ago by Gordon Smyth 53k • written 2.2 years ago by Jonathan ▴ 10

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5

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DESeq2

2.2 years ago Rockbar • 0

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2

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Bioconductor clusterProfiler

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by nilanjanamani88 • 0

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 2.2 years ago by Basti ▴ 780 • written 2.2 years ago by titangerd • 0

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STRINGdb stringdb

2.2 years ago robynne.braun • 0

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VariantAnnotation VariantFiltering

2.2 years ago Bogdan ▴ 670

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DGE DESeq2

2.2 years ago ruba-mahmoud • 0

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dplyr TreeSummarizedExperiment

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by question_guy • 0

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DESeq2

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by Theo ▴ 10

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756

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NewWave hgu133a2.db

updated 4 weeks ago by MurrayMertz • 0 • written 2.2 years ago by roy23032 • 0

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S4Vectors

updated 2.2 years ago by Hervé Pagès 16k • written 2.2 years ago by Dario Strbenac ★ 1.6k

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853

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featureCount Rsubread HPC

2.2 years ago kthapa • 0

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DifferentialExpression limma

updated 2.2 years ago by Gordon Smyth 53k • written 2.2 years ago by Laghalelle • 0

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RNA-seq featureCounts ht-seq

written 5.4 years ago by Arindam ▴ 80

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deseq2

written 5.7 years ago by hasse.bossenbroek • 0

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sradb

written 8.1 years ago by arielle • 0

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VariantAnnotation

written 5.1 years ago by Dario Strbenac ★ 1.6k

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gwastools

written 7.6 years ago by Adrienne Stilp ▴ 30

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Cancer Cancer

written 12.1 years ago by Cheng, Yong-Sheng ▴ 10

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Rgraphviz Rgraphviz

written 15.9 years ago by Gustavo Lacerda ▴ 10

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3.8k

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limma edger timecourse without replicate voom

written 9.1 years ago by Camila Orellana ▴ 10

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db0 release Annotation

2.2 years ago kayla.interdonato ▴ 160

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576

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limma

2.2 years ago Jonathan ▴ 10

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4

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RNASeqData DESeq2

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by sohail.mbio ▴ 10

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GEOmetadb GEOmetadb.sqlite dbConnect

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by Lee ▴ 10

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Epigenetics EpigeneticsWorkflow DMRcate

2.2 years ago Jitendra ▴ 10

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statistics Epigenetics limma

updated 2.2 years ago by James W. MacDonald 68k • written 2.2 years ago by Jitendra ▴ 10

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DelayedArray

updated 2.2 years ago by Hervé Pagès 16k • written 2.3 years ago by Koki ▴ 10

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bug nondetects HTqPCR

updated 2.2 years ago by Nat.Nataren • 0 • written 2.3 years ago by Ed Siefker ▴ 230

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863

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SNPediaR

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by wenbo • 0

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go DESeq2

updated 11 months ago by James W. MacDonald 68k • written 2.3 years ago by Alvin • 0

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edgeR

updated 2.3 years ago by Gordon Smyth 53k • written 2.3 years ago by jbono ▴ 10

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10

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2.0k

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AnnotationHubSoftware ensembldb

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by cjag • 0

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2.9k

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Bioconductor

updated 2.1 years ago by Manuel • 0 • written 2.3 years ago by xlu.cpu • 0

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933

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maSigPro

2.3 years ago hanna.g • 0

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curatedMetagenomicData

updated 2.3 years ago by Levi Waldron ★ 1.1k • written 2.3 years ago by levlitichev • 0

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pathview kegg KEGG

updated 14 months ago by Evan • 0 • written 2.3 years ago by Mauricio Diego • 0

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904

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HTqPCR

written 2.3 years ago by Ed Siefker ▴ 230

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3

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1.0k

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DifferentialExpression edgeR limma

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by stuartthafass • 0

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3

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3.6k

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FPKM RNASeqData DEAnalysis limma

2.3 years ago Ethan Nguyen • 0

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1

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875

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dmrseq

updated 2.3 years ago by keegan ▴ 60 • written 2.6 years ago by giancarlo.castellano • 0

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740

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TxDb.Dmelanogaster.UCSC.dm3.ensGene

updated 2.3 years ago by ATpoint ★ 5.0k • written 2.3 years ago by Gh • 0

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3

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914

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DifferentialExpression DESeq2

updated 2.3 years ago by ATpoint ★ 5.0k • written 2.3 years ago by xiaowen • 0

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edgeR limma

2.3 years ago petertam1343 • 0

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2.4k

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phyloseq microbiome Software

updated 2.3 years ago by ATpoint ★ 5.0k • written 2.3 years ago by HULFRED ▴ 10

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3

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996

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DESeq2

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by SH ▴ 10

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2

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920

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Clonality

2.3 years ago Zijun • 0