Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
1
reply
1.7k
views
install xps in ubuntu 14.04
xps
microarray
installation
updated 10.8 years ago by
cstrato
★ 3.9k • written 10.8 years ago by
cerikahp
• 0
1
vote
1
reply
2.3k
views
Does manual pre-filtering of the data on read counts violate the assumptions of the dispersion estimation in DESeq2?
deseq2
pre-filtering
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
Johannes Rainer
★ 2.1k
0
votes
6
replies
7.4k
views
DESEq2: Two factor design without interaction
deseq2
updated 3.8 years ago by
xiaofeiwang18266
▴ 60 • written 10.8 years ago by
hwildha
• 0
2
votes
2
replies
2.2k
views
floating toc with BiocStyle
BiocStyle
updated 10.8 years ago by
Andrzej Oleś
▴ 750 • written 10.8 years ago by
Guangchuang Yu
★ 1.2k
0
votes
1
reply
3.2k
views
plotMA in DEseq2
DEseq2
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
stephen66
▴ 50
0
votes
0
replies
1.1k
views
Bumphunter Output Details
bumphunter
10.8 years ago
andrew.j.skelton73
▴ 370
0
votes
3
replies
2.2k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene
convertIDs
10.8 years ago
Cheng-Yuan Kao
▴ 100
0
votes
4
replies
1.6k
views
Rsamtools failing to parse PEDIGREE header
Rsamtools
updated 10.8 years ago by
Valerie Obenchain
★ 6.8k • written 10.8 years ago by
Jonathan Ellis
• 0
0
votes
4
replies
18k
views
3D PCA Plot of RNA-seq Data using plotPCA from within DESeq2
deseq2
rnaseq
PCA
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
erin.gill81
▴ 60
0
votes
3
replies
2.6k
views
How to analyze a known fusion gene expression in RNAseq
fusion genes
rnaseq
10.8 years ago
stephen66
▴ 50
0
votes
3
replies
2.0k
views
UPC and Sequence file to remove GC bias
UPC_Generic_ExpressionSet
brainarray
updated 10.8 years ago by
Stephen Piccolo
▴ 600 • written 10.8 years ago by
sanj
▴ 20
0
votes
0
replies
1.1k
views
Support for MouseDivGeno arrays in Bioconductor
snpchip
microarray
affy
10.8 years ago
Sean Davis
21k
8
votes
14
replies
5.3k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 10.8 years ago by
willem.ligtenberg
▴ 150 • written 11.2 years ago by
Guangchuang Yu
★ 1.2k
1
vote
15
replies
4.9k
views
reactome.db: reactome IDs not mapped to pathway names
annotation
pathways
updated 10.8 years ago by
willem.ligtenberg
▴ 150 • written 11.2 years ago by
Johannes Rainer
★ 2.1k
1
vote
3
replies
2.0k
views
SCAN UPC normalisation
normalization
scan.upc
10.8 years ago
sanj
▴ 20
1
vote
1
reply
1.4k
views
Error while reading in peaksets into DiffBind.
diffbind
reading peaks
updated 10.8 years ago by
Gord Brown
▴ 670 • written 10.8 years ago by
surjray
• 0
0
votes
1
reply
634
views
Why I don't use the MethyAnalisis?
MethyAnalisis
10.8 years ago
452519402
• 0
0
votes
1
reply
1.3k
views
riboSeqR: plotTranscript error
riboSeqR
updated 10.8 years ago by
Thomas J Hardcastle
▴ 180 • written 10.8 years ago by
antonvila.s
• 0
0
votes
2
replies
1.4k
views
Annotation information for ecoli2.db
ecoli2.db
10.8 years ago
cporter
• 0
0
votes
2
replies
1.7k
views
Mystery transcript clusters on Mouse Gene 2.0 ST
mogene20sttranscriptcluster.db
10.8 years ago
knaxerova
▴ 10
1
vote
10
replies
6.1k
views
How to use brainarray custom cdf with any bioconductor package?
affy
oligo
customcdf
11.1 years ago • updated 10.8 years ago
rishi.dasroy
▴ 20
0
votes
1
reply
1.3k
views
Enrichment tests with an array read with read.table
read.table enrichment test fisher classic
10.8 years ago
lemmechange
• 0
0
votes
0
replies
1.6k
views
Correst use of GeneOverlap R Package
GeneOverlap
DEGgenes
affymetrixchip
bioconductor
10.8 years ago
svlachavas
▴ 840
1
vote
3
replies
2.2k
views
Problem installing XPS
xps
r
updated 10.8 years ago by
cstrato
★ 3.9k • written 10.8 years ago by
dhwani.dholakia
• 0
2
votes
6
replies
3.5k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
gen
▴ 30
3
votes
5
replies
3.2k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease
genetics
micro array data
microarray
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
pankajnarula84
▴ 20
1
vote
3
replies
2.4k
views
question about the EdgeR package: additive models and blocking
package
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
Fix Ace
▴ 100
0
votes
1
reply
2.1k
views
illumina 450k methylation: Cell composition for saliva
methylation
minfi
illuminahumanmethylation450k.db
saliva
cell composition
updated 10.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.8 years ago by
Brian Smith
▴ 120
0
votes
0
replies
2.2k
views
Job:
Post-Doctoral Research Fellow - Patient Genomics Data Visualization
visualization
genomics
personalized medicine
systemsbiology
js
Job
10.8 years ago
Hamid Bolouri
▴ 50
5
votes
4
replies
4.2k
views
Trimming with ShortRead
shortread
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
cookie
▴ 20
0
votes
5
replies
2.2k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation
pdinfobuilder
10.8 years ago
alakatos
▴ 130
1
vote
0
replies
1.1k
views
News:
Bioconductor Newsletter - April 2015
newsletter
News
10.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
4
replies
4.5k
views
Problem with DESeq : \"Error in FUN(newX[, i], ...) : could not find function \"locfunc\"\"
DESeq
DESeq
updated 10.8 years ago by
Wolfgang Huber
★ 13k • written 11.7 years ago by
Guest User
★ 13k
0
votes
4
replies
3.0k
views
some wgcna issues
wgcna
10.8 years ago
zhouxiuqing
• 0
0
votes
2
replies
1.9k
views
Assessing RNA-Seq sample replicates
RNASeq
updated 10.8 years ago by
Chris Seidel
▴ 80 • written 12.8 years ago by
Fix Ace
▴ 100
0
votes
1
reply
2.9k
views
Adding gene names to differential gene expression results in DESeq2
deseq2
gene names
differential gene expression
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
anpham
▴ 70
8
votes
4
replies
2.1k
views
Equivalence tests with edgeR
rnaseq
edger
equivalence
updated 10.8 years ago by
Aaron Lun
★ 29k • written 10.8 years ago by
roberto.spreafico
▴ 20
2
votes
4
replies
2.6k
views
summing integer RLE
rle
list
irange
grangeslist
updated 10.8 years ago by
Chris Seidel
▴ 80 • written 10.8 years ago by
gen
▴ 30
1
vote
5
replies
2.1k
views
limma modeling, paired samples: first disease type disappears from design matrix
limma design matrix
limma
updated 10.8 years ago by
Gordon Smyth
53k • written 11.6 years ago by
Riba Michela
▴ 90
3
votes
3
replies
11k
views
DESeq2: multiple factors and comparison of a main factor between samples
deseq2
multiple factor design
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
mat.lesche
▴ 110
3
votes
5
replies
11k
views
Error selecting Gene Symbol using Entrez ID via Homo.sapiens
homo sapiens
updated 10.8 years ago by
Marc Carlson
★ 7.2k • written 10.8 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
1.7k
views
data import into bioconductor
data import
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
sow19872003
• 0
0
votes
7
replies
5.9k
views
Visualization of rownames in the heatmap.2 function for selected DE genes of a microarray dataset
heatmap.2
gplots
differential gene expression
visualization
10.8 years ago
svlachavas
▴ 840
2
votes
7
replies
3.3k
views
Different filters with edgeR
edger
filtering
10.8 years ago
cpcantalapiedra
• 0
1
vote
2
replies
2.9k
views
Warning Message-depreciated after running rma in oligo package
oligo
pd.ragene.2.0.st
10.8 years ago
Surles, Monique
▴ 50
0
votes
4
replies
2.1k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast
limma
pathview
pathway analysis
updated 10.8 years ago by
Luo Weijun
★ 1.6k • written 10.8 years ago by
svlachavas
▴ 840
5
votes
4
replies
7.1k
views
Limma for RNA-seq data
limma
10.8 years ago
Delasa Aghamirzaie
▴ 70
11
votes
9
replies
2.3k
views
Correlation of a Linear Variable
limma
limma design matrix
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
856
views
error in using confFile
error
10.8 years ago
sow19872003
• 0
1
vote
1
reply
827
views
GeneticsBase for 3.1.1
geneticsbase
Bioconductor
R version 3.1.1
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
yorgos.athanasiadis
• 0
46,711 results • Page
463 of 935
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Aleena_Ensembl
▴ 30
Popular Question
to
Hervé Pagès
16k
Teacher
to
Michael Love
43k
Locations
• All
The city by the bay,
20 minutes ago
Singapore,
37 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
European Union,
2 hours ago
United States,
3 hours ago
Traffic: 1324 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6