0
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2
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4.6k
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Error in UseMethod("rescale")
clusterProfiler
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by • 0
1
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6
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6.5k
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KEGG enrichment analysis for non model organism
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3.1 years ago afsanarupa1 • 0
2
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3
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3.0k
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How to use a specific Bioconductor version in custom Dockerfile
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3.1 years ago jtaylor-predicine • 0
0
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1
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1.5k
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Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
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updated 2.6 years ago by • 0 • written 3.1 years ago by • 0
1
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1
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1.2k
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In readLines(csvfile)
pipeline testdata ChAMP
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
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5
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Build custom TxDb Package using makeTxDbPackage
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updated 3.1 years ago by 68k • written 3.1 years ago by • 0
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abs() error in rstudio
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written 3.1 years ago by • 0
0
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2
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Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 3.1 years ago by • 0
5
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6
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3.6k
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How to interpret Histogram of average log2 CPM filtering in EdgeR?
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3.1 years ago mohammedtoufiq91 ▴ 10
1
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3
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1.0k
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Limma-voom - Timepoint by timepoint comparison in timecourse experiment
limma
written 3.1 years ago by ▴ 30
0
votes
2
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1.2k
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could not find function "get_known_signatures"
MutationalPatterns
updated 3.1 years ago by 6.7k • written 3.1 years ago by ▴ 60
2
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2
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1.3k
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HMP1-II Metagenomic Data
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3.1 years ago Pauline ▴ 20
0
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3
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1.8k
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Problem with multiple sequence alignment using AlignSeqs
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updated 3.1 years ago by ▴ 150 • written 3.1 years ago by • 0
0
votes
3
replies
1.6k
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question about removing both known and unknown confounders
DESeq2 RUVSeq
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
votes
2
replies
889
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checkFullRank(modelMatrix) while neither factor can be predicted from each other.
DESeq2
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by ▴ 10
1
vote
13
replies
3.0k
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Deseq2 , result() taking too long > 3hrs
DESeq2
updated 2.9 years ago by • 0 • written 3.1 years ago by • 0
1
vote
2
replies
1.3k
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Extracting specific comparisons after fitting model in EdgeR
edgeR limma design RNASeq model.matrix
3.1 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
4.0k
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FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-processing step?
LowAssignedReads STAR featureCounts
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by • 0
0
votes
0
replies
849
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RUVg for SNAP-ChIP ?
RUVSeq
3.1 years ago Bogdan ▴ 670
4
votes
8
replies
3.5k
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Can we use rlog or vst data values in limma for differential expression analysis?
DESeq2 limma Normalization R
updated 2.6 years ago by 53k • written 3.1 years ago by ▴ 20
1
vote
2
replies
1.3k
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Does negative corfit$consensus cause issues while fitting a model in limma
limma R design model.matrix
3.1 years ago mohammedtoufiq91 ▴ 10
2
votes
9
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3.2k
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countToFPKM and featureLength
countToFPKM
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by ▴ 10
0
votes
0
replies
567
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RNA seq analysis
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3.1 years ago lesseyl • 0
11
votes
17
replies
4.1k
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SV4Vectors DataFrame bug with haven_labelled data
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updated 3.1 years ago by ▴ 20 • written 3.1 years ago by ▴ 30
1
vote
3
replies
994
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DESeq2 on multiple sample groups
DESeq2
written 3.1 years ago by • 0
3
votes
7
replies
3.7k
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Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
DESeq2 raw
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by ▴ 10
0
votes
2
replies
1.4k
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Differentially expression analysis of orthologous genes between two species
DESeq2 tximport
3.1 years ago Konstantinos • 0
0
votes
2
replies
842
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Setting up contrasts within a dataset within conditions (across different genotype) and across conditions (for the same genotype)
DESeq2
3.1 years ago nrama • 0
0
votes
1
reply
873
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+ HiCDCPlus
updated 2.6 years ago by • 0 • written 3.1 years ago by • 0
0
votes
3
replies
2.9k
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Cannot download flowUtils package from Bioconductor 3.16
Bioconductor flowUtils
updated 3.1 years ago by ★ 6.6k • written 3.1 years ago by • 0
1
vote
2
replies
2.6k
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ReactomePA:enrichPathway error in universe parameter
enrichPathway ReactomePA
updated 3.1 years ago by ▴ 40 • written 5.7 years ago by ▴ 10
1
vote
1
reply
1.2k
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Problems installing methylumi package
methylumi
updated 3.1 years ago by ★ 6.6k • written 3.1 years ago by • 0
2
votes
3
replies
2.3k
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Error while reading rsem files in tximport
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3.1 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
1.2k
views
TCGA RNAseq Normalization
normalization RNASEQ Normalization TCGAutils TCGA
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
votes
2
replies
1.3k
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ape::dnds produces nan value
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3.1 years ago Working • 0
0
votes
2
replies
2.3k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 3.1 years ago by 53k • written 3.1 years ago by • 0
2
votes
1
reply
1.4k
views
How to interpret DESeq2's padj after setting lfcThreshold and the log2FC is greater than lfcThreshold?
DESeq2
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 10
0
votes
2
replies
1.6k
views
Deseq2 and co-expression network normalization
DESeq2 Normalization DifferentialExpression r
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
votes
1
reply
770
views
DESeq2, normalization for within-sample comparison, and 3'-end RNAseq data
DESeq2
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
votes
1
reply
1.6k
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unable to load edgeR after installing it
edgeR
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
votes
3
replies
2.2k
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GDCprepare : Error: BiocParallel errors/Error in stopAndCache(title):
BiocParallelerrors
updated 22 months ago by • 0 • written 3.2 years ago by • 0
4
votes
2
replies
2.3k
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DESeq2 false positive result?
DESeq2
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by ▴ 10
1
vote
2
replies
1.5k
views
Changing the sample order in the PCA plot
DESeq2
3.1 years ago turtle888 • 0
0
votes
2
replies
1.5k
views
Remove low-expressed genes in DESeq2?
DESeq2 lowcountgenes deseq2 independent
written 3.1 years ago by • 0
2
votes
4
replies
6.0k
views
Possibility of using TPM or FPKM values in edgeR for differential expression analysis?
DESeq2 R edgeR Normalization RNASeq
3.1 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
820
views
coexpression networks
WGCNA igraph
3.1 years ago María José • 0
0
votes
0
replies
947
views
A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
3.1 years ago Abdullah • 0
1
vote
7
replies
2.5k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 3.1 years ago by 4.3k • written 3.1 years ago by • 0
1
vote
3
replies
2.2k
views
Many NAs using TAIR IDs for plotting KEGG pathways using pathview
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updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
votes
3
replies
1.3k
views
IHW for multiple regression
IHW
updated 3.0 years ago by ★ 13k • written 3.1 years ago by • 0
46,712 results • Page 69 of 935
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