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How to save the DEXSeq results
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Trim/Filter out-of-bounds GRanges
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updated 7 hours ago by 41k • written 8 hours ago by ▴ 70
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15 months ago • updated 31 minutes ago Poonam • 0
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updated 2 days ago by ★ 1.3k • written 4 days ago by ▴ 130
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updated 1 day ago by ★ 4.1k • written 3 days ago by • 0
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3 days ago Henry ▴ 10
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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4 days ago • updated 4 hours ago gene_bioconductor ▴ 10
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flowStats for CyTOF
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4 days ago tholmes • 0
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updated 4 days ago by 41k • written 4 days ago by • 0
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4 days ago yvonneh • 0
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4 days ago Ian D. ▴ 70
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5 days ago • updated 4 days ago Ian D. ▴ 70
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4 days ago • updated 3 days ago kcarey • 0
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5 days ago • updated 3 days ago Chris • 0
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updated 5 days ago by 41k • written 5 days ago by • 0
1
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5 days ago • updated 4 days ago Yveto • 0
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updated 6 days ago by 65k • written 6 days ago by • 0
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Help with error using camera() in limma
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6 days ago Chris • 0
1
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109
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Fold change calculation in Diffbind vs. DESEQ2?
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updated 6 days ago by 41k • written 6 days ago by • 0
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6 days ago • updated 3 days ago Aurora • 0
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Padj "NA" with thousands of low count although the raw read counts are quite large
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updated 6 days ago by 41k • written 7 days ago by • 0
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updated 6 days ago by 3.9k • written 6 days ago by • 0
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updated 6 days ago by ★ 4.1k • written 6 days ago by • 0
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7 days ago Chris • 0
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updated 6 days ago by 65k • written 7 days ago by • 0
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Could we detect difference at pathway level but not significant different at gene level?
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7 days ago Chris • 0
3
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DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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updated 7 days ago by ★ 4.1k • written 7 days ago by ▴ 10
1
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130
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Dominance Index for Shotgun Metagenomics Data
microbiome
updated 9 days ago by ▴ 40 • written 10 days ago by ★ 1.5k
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2
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updated 10 days ago by 41k • written 11 days ago by • 0
1
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3
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Deseq2. decontXcounts not integers. Useful alternative?
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updated 10 days ago by 41k • written 11 days ago by • 0
0
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138
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ATACseq merge peaks
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updated 10 days ago by ★ 4.1k • written 12 days ago by • 0
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2
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14 days ago • updated 9 hours ago Lluís Revilla Sancho ▴ 730
45,623 results • Page 1 of 913
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea() by James W. MacDonald 65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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