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658
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gscreend: Multiple T0 replicates
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3.4 years ago pk_labrador • 0
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intron coordination and annotation
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updated 3.4 years ago by ★ 5.0k • written 3.4 years ago by • 0
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WGCNA Export Eigengene Adjacency/Correlation values export
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updated 3.4 years ago by • 0 • written 3.4 years ago by • 0
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CytoML: gatingset_to_flowjo() "Could not find files for the given pattern(s)" error
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3.4 years ago nmchavez • 0
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how to identify the unwanted variables independent of phenotypes
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3.4 years ago Tongjun • 0
1
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0
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Why does surrogate variable confound with variable given in mod?
sva
3.4 years ago shdam ▴ 10
1
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0
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Error while running Case study n. 3: Integration of methylation and expression for ACC
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3.4 years ago hlee ▴ 10
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1
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1.3k
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DiffBind: dba.plotPCA() ellipse
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updated 3.4 years ago by ★ 1.4k • written 3.4 years ago by • 0
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how to obtain the download number of a bioconductor package
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3.4 years ago zhilongjia • 0
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ARACNe Sample Size
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3.5 years ago Harrsha • 0
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0
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how to calculate similarity between each cluster in scRNA and bulk RNA-seq
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3.5 years ago Guandong Shang ▴ 40
0
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0
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1.2k
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Cannot Install genefilter
genefilter
3.5 years ago Francis • 0
1
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0
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938
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Which algorithm would you use for the cell-cell communication analysis of bulk RNA seq datasets?
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3.5 years ago curiousmind007 ▴ 10
2
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5
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proteomics analysis
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updated 3.4 years ago by ▴ 100 • written 3.5 years ago by • 0
0
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0
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1.1k
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biomaRt has encountered an unknown server error
biomaRt
3.5 years ago Grace_H • 0
0
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0
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862
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Enrichment in genomic regions
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3.5 years ago María José • 0
0
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0
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How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
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3.5 years ago 04.marshal-decibel • 0
0
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0
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639
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regulondb version fixed to 10.8?
regutools
3.5 years ago a.giachino2 • 0
0
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3
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6.7k
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Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.4 years ago by ★ 4.1k • written 3.5 years ago by ▴ 10
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0
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How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
3.5 years ago as8020 • 0
0
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1
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1.3k
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fetaure counts err
featurecounts
updated 3.4 years ago by ★ 3.6k • written 3.5 years ago by • 0
0
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0
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ACMG Annotations for Variants in R
ACMG SNP
3.5 years ago hamza_karakurt ▴ 60
1
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6
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Error while running DESeq2
DifferentialExpression
3.5 years ago srikar • 0
1
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0
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1.0k
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Mapping patient dataset onto control dataset
Cytometry R Data
3.5 years ago hamiltond ▴ 10
0
votes
4
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1.6k
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rename phenotypic variables in pData (microarray) or colData (RNA-Seq)
PhenoGeneRanker
3.5 years ago • updated 3.4 years ago jogugil • 0
0
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0
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939
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nearest and nearestKNeighbors with k=1 produce different results
GenomicRanges
3.5 years ago Simon Coetzee ▴ 50
0
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0
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806
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coseq does not find object "cap"
coseq
3.5 years ago JaneDoe • 0
0
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1
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Pick some clusters to run trajectory and pseudotime analysis on Monocle3
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updated 2.7 years ago by • 0 • written 3.5 years ago by ▴ 10
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0
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Calculating tumour purity having only CNA data
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3.5 years ago JAcky • 0
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2
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bootstrapNullAlternativeModel() returns error
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3.5 years ago Tobias ▴ 40
0
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1
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1.9k
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During dba(sampleSheet = "samples.csv") step, Error in mergeScores(merged, def, peakset, TRUE) : Not compatible with requested type: [type=charac…
DiffBind
updated 3.5 years ago by ★ 5.2k • written 3.5 years ago by • 0
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0
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set.seed in function vs clusterSetRNGStream: switching from one to another
parallel seed
3.5 years ago ZheFrench ▴ 60
0
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1
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1.6k
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Use of Scater for QC in scRNA-seq: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
updated 3.5 years ago by ★ 5.0k • written 3.5 years ago by • 0
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0
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Problem with "TxDb.Mmusculus.UCSC.mm39.refGene" to annotate genes with ChIPseeker
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3.5 years ago Palmira • 0
0
votes
0
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791
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Timeout error when querying DGIDB
rDGIdb
3.5 years ago Jannah • 0
0
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0
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Differential expression with single cell data: any good two component (hurdle) models recently?
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3.5 years ago Nik Tuzov ▴ 90
0
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1
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DiffBind: GreyListChIP error: Error: $ operator is invalid for atomic vectors
DiffBind
updated 3.5 years ago by ★ 5.2k • written 3.5 years ago by ▴ 10
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votes
0
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742
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Is there a Bioconductor package to calculate TFs regulatory networks?
TFs Transcription regulator
3.5 years ago OliverBoynton • 0
0
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0
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855
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Typo in citation for RNASeqPower
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3.5 years ago stephenjjohnson • 0
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0
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632
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diffbind dba.report
diffbind
3.5 years ago jonathanho1989 • 0
1
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4
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How to create an aldex.clr object from a "selex" data table
ALDEx2
3.5 years ago Greg • 0
0
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2
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851
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Error in NxtIRFcore
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3.5 years ago ieki.tky • 0
1
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5
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Unable to load mm10 genome for use with GenomicDistributions package
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3.5 years ago rashford • 0
1
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0
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stuck on unimplemented type 'list' in 'EncodeElement'
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updated 3.5 years ago by 4.2k • written 3.5 years ago by ▴ 10
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2
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I need cancer databases suggestion
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updated 3.5 years ago by 700 • written 3.5 years ago by • 0
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Check the CummeRbund PDF.
cummeRbund
updated 3.5 years ago by 4.2k • written 3.5 years ago by • 0
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Mutect version, matched normal and manual curation in PureCN
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3.5 years ago • updated 2.9 years ago Ken C • 0
0
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0
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openCyto 2.8.0: error in prior_flowclust
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3.5 years ago martin.andres • 0
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0
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diffbind dba.count error
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3.5 years ago jonathanho1989 • 0
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error installing phyloseq
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updated 3.5 years ago by 4.2k • written 3.5 years ago by • 0
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