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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 19 days ago
shepherl
3.9k
1
vote
8
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1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.9k
0
votes
7
replies
705
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
9 weeks ago • updated 13 days ago
shepherl
3.9k
0
votes
4
replies
739
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.9k
0
votes
3
replies
1.2k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 14 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
▴ 70
0
votes
2
replies
1.1k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.1 years ago by
shepherl
3.9k
1
vote
2
replies
655
views
News:
Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia
BioCAsia
Conferences
Events
BioC
written 18 months ago by
Peter Hickey
▴ 740
0
votes
2
replies
880
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
13 months ago • updated 11 months ago
shepherl
3.9k
0
votes
1
reply
270
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
8 weeks ago • updated 5 weeks ago
shepherl
3.9k
5
votes
1
reply
440
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
1
vote
1
reply
714
views
News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
community
written 16 months ago by
shepherl
3.9k
3
votes
1
reply
756
views
News:
[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
News
written 4.2 years ago by
Leonardo Collado Torres
★ 1.0k
2
votes
1
reply
282
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 3 months ago by
Lori
• 0 • written 3 months ago by
shepherl
3.9k
1
vote
1
reply
1.4k
views
News:
Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq
deseq2
proteomics
transcriptomics
workshop
News
written 5.2 years ago by
Laurent Gatto
1.6k
0
votes
1
reply
309
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 6 weeks ago by
howell
• 0 • written 11 weeks ago by
Maria Doyle
▴ 70
3
votes
1
reply
318
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 4 months ago by
shepherl
3.9k
1
vote
1
reply
1.1k
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.1 years ago by
shepherl
3.9k
0
votes
1
reply
1.2k
views
News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 15 months ago by
Maria Doyle
▴ 70
0
votes
1
reply
1.5k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 9 months ago by
Michael Love
41k • written 9 months ago by
Benjamin
▴ 30
0
votes
0
replies
82
views
News:
Services
flowBeads
19 days ago
creativepeptides2018
• 0
1
vote
0
replies
274
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
10 weeks ago • updated 8 weeks ago
shepherl
3.9k
0
votes
0
replies
176
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
11 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
411
views
News:
EMBO|EMBL Conference "AI and Biology"
EMBL
Heidelberg
AI
Conference
5 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
507
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
3
votes
0
replies
72
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
5 days ago
shepherl
3.9k
0
votes
0
replies
539
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor
Network
RNASeqData
SystemsBiology
9 months ago
info
▴ 10
0
votes
0
replies
539
views
News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
0
votes
0
replies
425
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
8 months ago
shepherl
3.9k
0
votes
0
replies
82
views
News:
TIDES USA 2024
flowBeads
19 days ago
bocsci11
• 0
0
votes
0
replies
456
views
News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
Website
9 months ago
Maria Doyle
▴ 70
0
votes
0
replies
144
views
News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
6 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
228
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity
flowCore
3 months ago
info
▴ 10
2
votes
0
replies
243
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
11 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
1.1k
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
12 months ago • updated 11 months ago
Maria Doyle
▴ 70
0
votes
0
replies
367
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
6 months ago
info
▴ 10
0
votes
0
replies
154
views
News:
Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
9 weeks ago
info
▴ 10
1
vote
0
replies
197
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc204
6 weeks ago • updated 3 hours ago
shepherl
3.9k
1
vote
0
replies
404
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
7 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
536
views
News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
2
votes
0
replies
486
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago
Maria Doyle
▴ 70
0
votes
0
replies
165
views
News:
Join BOC Sciences at Drug Discovery Chemistry 2024
DFP
8 weeks ago
cv.jam.zhxf17875
• 0
0
votes
0
replies
467
views
News:
Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor
Community
BioC2023
11 months ago
Maria Doyle
▴ 70
0
votes
0
replies
277
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
4 months ago
info
▴ 10
0
votes
0
replies
14
views
Spam:
Spreading Smiles with Group Greeting Cards!
CARNIVAL
9 months ago
carterethan745
0
0
votes
0
replies
72
views
News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
13 days ago
info
▴ 10
0
votes
0
replies
85
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
24 days ago
shepherl
3.9k
0
votes
0
replies
101
views
News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
Sequencing
SequencingData
25 days ago
communication
• 0
0
votes
0
replies
99
views
News:
Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry
conference
28 days ago
Wolfgang Huber
★ 13k
0
votes
0
replies
228
views
News:
2024 May Institute on computation and statistics for mass spectrometry and proteomics
MSstats
MSstatsTMT
MSstatsShiny
MSstatsPTM
3 months ago
kohler.d
• 0
1
vote
0
replies
211
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
3 months ago
Benjamin
▴ 30
61 results • Page
1 of 2
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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