Showing : Cancer • reset
2
votes
3
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1.2k
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 3 months ago by • 0 • written 4.5 years ago by • 0
0
votes
3
replies
2.5k
views
Background correction with neqc
Normalization Cancer Normalization Cancer
updated 6 months ago by 50k • written 12.4 years ago by ★ 13k
0
votes
1
reply
11k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 10.5 years ago by ▴ 10
0
votes
1
reply
542
views
BioC packages in cancer genomics
genomics cancer
updated 14 months ago by ★ 3.9k • written 14 months ago by ▴ 670
0
votes
0
replies
581
views
Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
14 months ago Colm • 0
1
vote
6
replies
2.1k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 15 months ago by • 0 • written 3.6 years ago by • 0
0
votes
0
replies
709
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
17 months ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
760
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
0
votes
0
replies
739
views
Calculating tumour purity having only CNA data
PureCN CNA purity cancer
22 months ago JAcky • 0
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
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0
replies
744
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
23 months ago Sarah • 0
0
votes
1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.2 years ago by ▴ 810
1
vote
0
replies
740
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.0 years ago DKFZ International PhD Program ▴ 10
0
votes
1
reply
711
views
WGCNA
Cancer
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
0
replies
836
views
Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.0 years ago • updated 2.7 years ago Gordon Smyth 50k
0
votes
0
replies
856
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.1 years ago Daniel Brewer ▴ 100
0
votes
0
replies
907
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.4 years ago Daniel Brewer ▴ 100
0
votes
0
replies
946
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
3.5 years ago Daniel Brewer ▴ 100
2
votes
13
replies
1.4k
views
Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
4
votes
7
replies
1.5k
views
Limma sample groups
microarray limma affy cancer
updated 3.6 years ago by 50k • written 3.6 years ago by • 0
0
votes
5
replies
2.0k
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by ▴ 10
0
votes
5
replies
1.9k
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 3.7 years ago by 41k • written 3.7 years ago by • 0
0
votes
0
replies
817
views
Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.2 years ago • updated 3.9 years ago Daniel Brewer ▴ 100
4
votes
10
replies
2.5k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 10
1
vote
2
replies
3.8k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.0 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
3
replies
1.3k
views
Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.1 years ago by 3.9k • written 4.1 years ago by • 0
0
votes
1
reply
1.0k
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by • 0
0
votes
0
replies
981
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
868
views
Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.2 years ago Patrick Kimes ▴ 10
0
votes
0
replies
944
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
4.4 years ago • updated 4.3 years ago marschaefer • 0
0
votes
0
replies
674
views
Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.3 years ago luciomora8 • 0
0
votes
0
replies
839
views
Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
4.4 years ago Daniel Brewer ▴ 100
0
votes
0
replies
566
views
miRNA and drugs
cancer
4.5 years ago maria.k.pagoni • 0
1
vote
0
replies
1.0k
views
Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
1
vote
0
replies
985
views
Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
864
views
Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
4.6 years ago Johannes Rainer ★ 2.0k
1
vote
4
replies
1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 4.6 years ago by ▴ 120 • written 4.6 years ago by • 0
2
votes
1
reply
2.3k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 4.6 years ago by ▴ 830 • written 4.6 years ago by ▴ 20
0
votes
0
replies
763
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
4.6 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
910
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
votes
0
replies
690
views
News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
4.6 years ago Ning Leng • 0
0
votes
5
replies
1.9k
views
RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
0
votes
0
replies
815
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
4.8 years ago hanna_engqvist • 0
1
vote
0
replies
1.5k
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.0 years ago • updated 4.9 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
851
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
4.9 years ago jmaanaki • 0
0
votes
2
replies
898
views
Chromosomal location mapping for miRNAs
cancer
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
3
replies
972
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 5.0 years ago by 41k • written 5.0 years ago by • 0
1
vote
4
replies
974
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 5.0 years ago by 41k • written 5.0 years ago by • 0
4
votes
1
reply
8.6k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
0
votes
1
reply
747
views
Help installing netReg
netReg cancer
5.1 years ago sbrackett007 • 0
50 results • Page 1 of 1
Recent ...
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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