Showing : EPIC • reset
0
votes
0
replies
486
views
combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
13 months ago Jitendra ▴ 10
2
votes
1
reply
992
views
lumi: Importing Methylation EPIC IDAT files
lumi EPIC Methylation
4.0 years ago Zach Roe ▴ 10
0
votes
2
replies
1.0k
views
Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi minfi microarray epic
4.1 years ago • updated 3.5 years ago Nala • 0
1
vote
1
reply
950
views
SVA paired samples
SVA EPIC methylation limma
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
1
vote
3
replies
1.4k
views
Skewed beta-distribution from Methylation EPIC array data
ChAMP EPIC Illumina Methylation
4.3 years ago erwin.tomasich ▴ 10
1
vote
1
reply
824
views
Issue with ChAMP DMP.GUI
ChAMP champ methylation EPIC
updated 4.3 years ago by ▴ 90 • written 4.3 years ago by • 0
2
votes
16
replies
2.6k
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation epic champ champ.load() Methylation array
updated 4.3 years ago by ▴ 280 • written 4.3 years ago by ▴ 20
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 10
0
votes
4
replies
1.6k
views
WGCNA soft threshold with methylation data but no scale-free topology
methylation EPIC scale-free topology WGCNA
updated 15 months ago by • 0 • written 4.7 years ago by • 0
0
votes
1
reply
1.8k
views
How to analyse 450k and EPIC methylation data together?
minfi 450k EPIC analysis
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
0
votes
3
replies
1.2k
views
Limma for cell components effect on response
450k EPIC minfi limma cell components
updated 4.8 years ago by ★ 28k • written 4.8 years ago by • 0
1
vote
3
replies
1.2k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 4.9 years ago by ▴ 50 • written 4.9 years ago by ★ 1.1k
0
votes
0
replies
828
views
Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.2 years ago rmf ▴ 20
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.2 years ago rmf ▴ 20
2
votes
1
reply
1.3k
views
EPIC methylation array - analysis with ChAMP - how to export bed/wig file to view in UCSC/IGV?
methylation epic champ
updated 5.5 years ago by ▴ 280 • written 5.5 years ago by ▴ 10
0
votes
2
replies
2.1k
views
ChAMP Normalization on EPIC Methylation Data
ChAMP Normalization FunctionalNormalization methylation EPIC
5.6 years ago yuabrahamliu • 0
5
votes
9
replies
1.7k
views
limma Multi-level Experiments correcting for continuous covariates
limma epic methylation limma design matrix covariates
updated 5.7 years ago by ★ 28k • written 5.7 years ago by • 0
0
votes
0
replies
912
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
votes
3
replies
1.6k
views
Minfi error when using force=TRUE in read.metharray
minfi methylation epic
5.7 years ago jbar3141 • 0
0
votes
0
replies
1.1k
views
Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
minfi methylation EPIC
5.8 years ago sichan • 0
2
votes
3
replies
2.1k
views
"Seems your IDAT file not from one Array"
EPIC methylation ChAMP
updated 6.1 years ago by ▴ 30 • written 6.1 years ago by • 0
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 7.0 years ago by ★ 3.9k • written 7.0 years ago by • 0
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.1 years ago by 65k • written 7.1 years ago by ▴ 10
0
votes
3
replies
2.0k
views
Unknown annotation in the RGChannelSetExtended object
minfi idat annotation EPIC
updated 7.2 years ago by • 0 • written 7.2 years ago by ▴ 20
0
votes
5
replies
2.2k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon methylation EPIC normalization
7.3 years ago Wade Davis ▴ 60
0
votes
0
replies
1.4k
views
News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
7.6 years ago Yuan Tian ▴ 90
0
votes
1
reply
2.0k
views
News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
7.7 years ago Yuan Tian ▴ 90
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi illuminaio epic
7.9 years ago • updated 7.8 years ago m.van_iterson ▴ 20
0
votes
2
replies
1.2k
views
error using EPIC early access version arrays with minfi
epic minfi read.metharray software error
7.9 years ago mcastrod • 0
29 results • Page 1 of 1
Recent ...
Replies
Comment: Cannot connect to ExperimentHub server by Jiayu • 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Awards • All
Popular Question to Gyan Prakash Mishra ▴ 10
Popular Question to Gordon Smyth 50k
Popular Question to WouterDeCoster ▴ 130
Scholar to Michael Love 42k
Popular Question to Malcolm Cook ★ 1.6k
Locations • All
Canada, 30 minutes ago
United States, 30 minutes ago
United States, 35 minutes ago
Australia, 41 minutes ago
United States, 1 hour ago
Traffic: 464 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6