Showing : Ensembldb • reset
0
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198
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News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 10 weeks ago by • 0
0
votes
2
replies
619
views
Job: Job: Ensembl Genebuild Project Leader
JobPosting ensembldb
written 5 months ago by ▴ 30
1
vote
3
replies
1.4k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 6 months ago by ▴ 30
0
votes
0
replies
286
views
Job: Job: Ensembl Dataflow Coordinator
JobPosting ensembldb
5 months ago Aleena_Ensembl ▴ 30
0
votes
4
replies
1.8k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 10 months ago by 68k • written 10 months ago by • 0
0
votes
0
replies
951
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
13 months ago Ensembl_Jorge • 0
1
vote
3
replies
1.8k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 15 months ago by 68k • written 22 months ago by ▴ 10
0
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0
replies
659
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
15 months ago Aleena_Ensembl ▴ 30
1
vote
1
reply
1.0k
views
biomaRt getSequence(): Error in .lock2
ensembldb getSequence
updated 16 months ago by ★ 6.6k • written 16 months ago by ▴ 10
1
vote
0
replies
1.0k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
18 months ago Aleena_Ensembl ▴ 30
2
votes
5
replies
1.1k
views
get BM error
ensembldb
updated 19 months ago by 68k • written 19 months ago by • 0
10
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41
replies
10k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 18 months ago by • 0 • written 7.0 years ago by ★ 4.1k
0
votes
1
reply
812
views
Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 20 months ago by 43k • written 20 months ago by ▴ 10
0
votes
2
replies
1.0k
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus
written 21 months ago by ▴ 10
2
votes
4
replies
1.7k
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
written 22 months ago by ▴ 70
2
votes
3
replies
1.1k
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
2.0 years ago • updated 24 months ago R_Page • 0
4
votes
6
replies
3.6k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 14 months ago by • 0 • written 2.1 years ago by • 0
0
votes
4
replies
1.6k
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
2.1 years ago Rockbar • 0
0
votes
10
replies
1.9k
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware ensembldb
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
7
votes
6
replies
9.0k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.1 years ago by 700 • written 3.3 years ago by ▴ 20
3
votes
1
reply
5.8k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
1
reply
3.1k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 2.4 years ago by 43k • written 2.4 years ago by ▴ 30
0
votes
2
replies
2.5k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by • 0
0
votes
0
replies
1.2k
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
2.8 years ago ginie.dub • 0
1
vote
0
replies
1.2k
views
News: Ensembl 109 has been released
ensembldb
2.8 years ago Aleena_Ensembl ▴ 30
0
votes
3
replies
2.8k
views
Uniprot IDs and NCBI taxonomy IDs to coding sequences
ensembldb biodbUniprot
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
2
votes
4
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1.3k
views
Successor of genesBy Defunct Function
ensembldb
updated 2.9 years ago by 16k • written 2.9 years ago by ★ 1.6k
5
votes
3
replies
2.8k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
3.1 years ago • updated 2.9 years ago jamie.gearing ▴ 60
1
vote
3
replies
1.6k
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
3.0 years ago mbansal • 0
2
votes
3
replies
3.0k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.9 years ago by • 0 • written 3.0 years ago by ▴ 10
1
vote
2
replies
1.4k
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 3.1 years ago by ▴ 10
0
votes
5
replies
3.4k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by ▴ 30
0
votes
4
replies
1.8k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
3.2 years ago dario.beraldi • 0
2
votes
3
replies
3.9k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by ▴ 10
0
votes
1
reply
1.1k
views
getBM Error with certain attribute combinations
biomaRt ensembldb
updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by • 0
0
votes
3
replies
2.5k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
3.3 years ago sandmann.t ▴ 70
1
vote
0
replies
1.2k
views
News: Ensembl 107 has been released
ensembldb
3.4 years ago Aleena_Ensembl ▴ 30
0
votes
1
reply
1.9k
views
bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
biomaRt ensembldb paralogues
updated 3.4 years ago by ★ 1.6k • written 3.4 years ago by • 0
0
votes
3
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4.5k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
3.4 years ago elmfinds • 0
2
votes
0
replies
1.1k
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
3.6 years ago Benjamin ▴ 30
2
votes
2
replies
2.1k
views
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
3.7 years ago Matthew Thornton ▴ 390
0
votes
2
replies
4.2k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 3.8 years ago by • 0
9
votes
14
replies
10k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 16 months ago by 4.2k • written 3.9 years ago by ▴ 40
0
votes
2
replies
2.3k
views
Can't convert dog ensembl IDs into gene names
biomaRt ensembldb
updated 3.9 years ago by ★ 5.0k • written 3.9 years ago by • 0
0
votes
3
replies
2.0k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb
updated 3.9 years ago by ★ 2.1k • written 3.9 years ago by • 0
1
vote
0
replies
1.2k
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
4.0 years ago mchakiachvili ▴ 20
0
votes
1
reply
1.5k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 4.0 years ago by • 0
10
votes
18
replies
4.4k
views
ensembldb support for Ensembl's transcript_name column
ensembldb
updated 4.0 years ago by 16k • written 4.1 years ago by 43k
0
votes
3
replies
1.8k
views
Problem select / ensembl package
ensembldb
4.1 years ago yinnahm • 0
101 results • Page 1 of 3
Recent ...
Replies
Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Popular Question to shepherl 4.2k
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Popular Question to James W. MacDonald 68k
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