Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Ensembldb
•
reset
0
votes
0
replies
107
views
News:
Ensembl 115 has been released!
ensembl
ensembldb
biomaRt
6 weeks ago
Ensembl_Jorge
• 0
0
votes
2
replies
598
views
Job:
Job: Ensembl Genebuild Project Leader
JobPosting
ensembldb
written 4 months ago by
Aleena_Ensembl
▴ 30
1
vote
3
replies
1.3k
views
News:
Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt
ensembldb
written 5 months ago by
Aleena_Ensembl
▴ 30
0
votes
0
replies
257
views
Job:
Job: Ensembl Dataflow Coordinator
JobPosting
ensembldb
4 months ago
Aleena_Ensembl
▴ 30
0
votes
4
replies
1.7k
views
Biomart and ensembl not working?
ensembldb
biomaRt
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
Zuzer
• 0
0
votes
0
replies
851
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
12 months ago
Ensembl_Jorge
• 0
1
vote
3
replies
1.8k
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 14 months ago by
James W. MacDonald
68k • written 21 months ago by
Pez
▴ 10
0
votes
0
replies
631
views
Job:
Ensembl Job Vacancies
genomes
Annotation
GenomicVariation
ensembldb
14 months ago
Aleena_Ensembl
▴ 30
1
vote
1
reply
973
views
biomaRt getSequence(): Error in .lock2
ensembldb
getSequence
updated 15 months ago by
Mike Smith
★ 6.6k • written 15 months ago by
Melanie
▴ 10
1
vote
0
replies
972
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
17 months ago
Aleena_Ensembl
▴ 30
2
votes
5
replies
1.0k
views
get BM error
ensembldb
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
Fara
• 0
10
votes
41
replies
9.9k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 17 months ago by
Daniele
• 0 • written 6.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
771
views
Convert transcriptomic bam to genomic bam?
ensembldb
transcriptome
genome
coordinateconversion
updated 19 months ago by
Michael Love
43k • written 19 months ago by
saadmurtazakhan
▴ 10
0
votes
2
replies
971
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene
ensembldb
GenomicFeatures
Mus_musculus
written 21 months ago by
ramonmassoni
▴ 10
2
votes
4
replies
1.7k
views
seqlevelsStyle() not working
ensembldb
genomei
GenomeInfoDb
written 21 months ago by
Kai Hu
▴ 70
2
votes
3
replies
1.1k
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
23 months ago
R_Page
• 0
4
votes
6
replies
3.4k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
updated 13 months ago by
MauriAndres
• 0 • written 24 months ago by
j_denton
• 0
0
votes
4
replies
1.6k
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO
ensembldb
2.0 years ago
Rockbar
• 0
0
votes
10
replies
1.9k
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware
ensembldb
updated 2.1 years ago by
James W. MacDonald
68k • written 2.1 years ago by
cjag
• 0
7
votes
6
replies
8.9k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 2.1 years ago by
Marcel Ramos
700 • written 3.2 years ago by
Recep
▴ 20
3
votes
1
reply
5.7k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
Max
▴ 10
0
votes
1
reply
1.1k
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread
ensembldb
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
Ya
• 0
0
votes
1
reply
3.0k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
Benjamin
▴ 30
0
votes
2
replies
2.4k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 2.6 years ago by
Johannes Rainer
★ 2.1k • written 2.6 years ago by
Christopher
• 0
0
votes
0
replies
1.2k
views
BiomaRt - Problem to access homolog lists
biomaRt
ensembldb
2.7 years ago
ginie.dub
• 0
1
vote
0
replies
1.2k
views
News:
Ensembl 109 has been released
ensembldb
2.7 years ago
Aleena_Ensembl
▴ 30
0
votes
3
replies
2.8k
views
Uniprot IDs and NCBI taxonomy IDs to coding sequences
ensembldb
biodbUniprot
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
Peter
• 0
2
votes
4
replies
1.3k
views
Successor of genesBy Defunct Function
ensembldb
updated 2.8 years ago by
Hervé Pagès
16k • written 2.8 years ago by
Dario Strbenac
★ 1.6k
5
votes
3
replies
2.8k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt
ensembldb
ensembl
3.0 years ago • updated 2.8 years ago
jamie.gearing
▴ 60
1
vote
3
replies
1.6k
views
Convert Chromosome postion to gene symbol
biomaRt
ensembldb
2.9 years ago
mbansal
• 0
2
votes
3
replies
3.0k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal
ensembldb
rtracklayer
Annotation
updated 2.8 years ago by
rbj
• 0 • written 2.9 years ago by
Jake
▴ 10
1
vote
2
replies
1.3k
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 3.0 years ago by
Louisse
▴ 10
0
votes
5
replies
3.4k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R
ensembldb
Annotation
updated 3.1 years ago by
Guido Hooiveld
★ 4.1k • written 3.1 years ago by
Mohamed
▴ 30
0
votes
4
replies
1.8k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt
GO
ensembldb
fgsea
3.1 years ago
dario.beraldi
• 0
2
votes
3
replies
3.8k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi
GO
clusterProfiler
enrichplot
ensembldb
updated 3.1 years ago by
merv
▴ 150 • written 3.1 years ago by
simone.nevills
▴ 10
0
votes
1
reply
1.1k
views
getBM Error with certain attribute combinations
biomaRt
ensembldb
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
Luisa
• 0
0
votes
3
replies
2.5k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub
org.Hs.eg.db
ensembldb
3.3 years ago • updated 3.2 years ago
sandmann.t
▴ 70
1
vote
0
replies
1.2k
views
News:
Ensembl 107 has been released
ensembldb
3.3 years ago
Aleena_Ensembl
▴ 30
0
votes
1
reply
1.8k
views
bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
biomaRt
ensembldb
paralogues
updated 3.3 years ago by
Malcolm Cook
★ 1.6k • written 3.3 years ago by
Zeroual
• 0
0
votes
3
replies
4.5k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
3.3 years ago
elmfinds
• 0
2
votes
0
replies
1.1k
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
3.6 years ago
Benjamin
▴ 30
2
votes
2
replies
2.0k
views
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
3.7 years ago
Matthew Thornton
▴ 380
0
votes
2
replies
4.1k
views
How to get the rsID of 4 million SNPA
ensembldb
SNP
SNPData
genomes
written 3.7 years ago by
Weiqiong
• 0
9
votes
14
replies
9.9k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 15 months ago by
shepherl
4.2k • written 3.8 years ago by
jon.klonowski
▴ 40
0
votes
2
replies
2.3k
views
Can't convert dog ensembl IDs into gene names
biomaRt
ensembldb
updated 3.9 years ago by
ATpoint
★ 5.0k • written 3.9 years ago by
4214811
• 0
0
votes
3
replies
2.0k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79
EnsDb.Mmusculus.v75
ensembldb
updated 3.9 years ago by
Johannes Rainer
★ 2.1k • written 3.9 years ago by
kelvin
• 0
1
vote
0
replies
1.2k
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
3.9 years ago
mchakiachvili
▴ 20
0
votes
1
reply
1.5k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 4.0 years ago by
Lillian
• 0
10
votes
18
replies
4.3k
views
ensembldb support for Ensembl's transcript_name column
ensembldb
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
Michael Love
43k
0
votes
3
replies
1.8k
views
Problem select / ensembl package
ensembldb
4.0 years ago
yinnahm
• 0
101 results • Page
1 of 3
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards
• All
Popular Question
to
shepherl
4.2k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Ou, Jianhong
★ 1.3k
Popular Question
to
Maria Doyle
▴ 100
Popular Question
to
Gordon Smyth
53k
Locations
• All
The city by the bay,
1 hour ago
United States,
1 hour ago
United States,
2 hours ago
United States,
3 hours ago
United States,
6 hours ago
Traffic: 501 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6