Showing : Ensembldb • reset
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Job: Jobs at Ensembl
ensembldb
4 weeks ago Aleena_Ensembl ▴ 30
1
vote
2
replies
455
views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 9 weeks ago by ▴ 10
0
votes
1
reply
370
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 4 months ago by ▴ 10
0
votes
2
replies
711
views
Job: Job: Ensembl Genebuild Project Leader
JobPosting ensembldb
written 8 months ago by ▴ 30
1
vote
3
replies
1.6k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 9 months ago by ▴ 30
0
votes
0
replies
341
views
Job: Job: Ensembl Dataflow Coordinator
JobPosting ensembldb
8 months ago Aleena_Ensembl ▴ 30
0
votes
4
replies
2.4k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 12 months ago by 68k • written 12 months ago by • 0
0
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0
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1.1k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
15 months ago Ensembl_Jorge ▴ 10
1
vote
3
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2.0k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 17 months ago by 68k • written 2.0 years ago by ▴ 10
0
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0
replies
733
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
17 months ago Aleena_Ensembl ▴ 30
1
vote
1
reply
1.2k
views
biomaRt getSequence(): Error in .lock2
ensembldb getSequence
updated 18 months ago by ★ 6.6k • written 18 months ago by ▴ 10
1
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0
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1.2k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
21 months ago Aleena_Ensembl ▴ 30
2
votes
5
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1.2k
views
get BM error
ensembldb
updated 21 months ago by 68k • written 21 months ago by • 0
10
votes
44
replies
11k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 29 days ago by • 0 • written 7.2 years ago by ★ 4.1k
0
votes
1
reply
899
views
Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 22 months ago by 43k • written 22 months ago by ▴ 10
0
votes
2
replies
1.2k
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus
written 24 months ago by ▴ 10
2
votes
4
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1.9k
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
written 24 months ago by ▴ 70
2
votes
3
replies
1.2k
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
2.2 years ago R_Page • 0
4
votes
6
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4.0k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 16 months ago by • 0 • written 2.3 years ago by • 0
0
votes
4
replies
1.9k
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
2.3 years ago Rockbar • 0
0
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10
replies
2.1k
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware ensembldb
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
7
votes
6
replies
9.7k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.3 years ago by 700 • written 3.5 years ago by ▴ 20
3
votes
1
reply
6.5k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 2.5 years ago by 68k • written 2.5 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
1
reply
3.2k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 2.5 years ago by 43k • written 2.6 years ago by ▴ 30
0
votes
2
replies
3.2k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 2.8 years ago by ★ 2.1k • written 2.8 years ago by • 0
0
votes
0
replies
1.3k
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
3.0 years ago ginie.dub • 0
1
vote
0
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1.3k
views
News: Ensembl 109 has been released
ensembldb
3.0 years ago Aleena_Ensembl ▴ 30
0
votes
3
replies
3.2k
views
Uniprot IDs and NCBI taxonomy IDs to coding sequences
ensembldb biodbUniprot
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
2
votes
4
replies
1.4k
views
Successor of genesBy Defunct Function
ensembldb
updated 3.1 years ago by 16k • written 3.1 years ago by ★ 1.6k
5
votes
3
replies
3.0k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
3.3 years ago • updated 3.1 years ago jamie.gearing ▴ 60
1
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3
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1.7k
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
3.2 years ago mbansal • 0
2
votes
3
replies
3.3k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 3.0 years ago by • 0 • written 3.2 years ago by ▴ 10
1
vote
2
replies
1.4k
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 3.3 years ago by ▴ 10
0
votes
5
replies
3.7k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.3 years ago by ★ 4.1k • written 3.3 years ago by ▴ 30
0
votes
4
replies
2.0k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
3.4 years ago dario.beraldi • 0
2
votes
3
replies
4.1k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.4 years ago by ▴ 150 • written 3.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
getBM Error with certain attribute combinations
biomaRt ensembldb
updated 3.4 years ago by ★ 5.0k • written 3.4 years ago by • 0
0
votes
3
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2.9k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
3.5 years ago sandmann.t ▴ 70
1
vote
0
replies
1.3k
views
News: Ensembl 107 has been released
ensembldb
3.6 years ago Aleena_Ensembl ▴ 30
0
votes
1
reply
2.0k
views
bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
biomaRt ensembldb paralogues
updated 3.6 years ago by ★ 1.6k • written 3.6 years ago by • 0
0
votes
3
replies
4.7k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
3.6 years ago elmfinds • 0
2
votes
0
replies
1.2k
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
3.8 years ago Benjamin ▴ 30
2
votes
2
replies
2.2k
views
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
3.9 years ago Matthew Thornton ▴ 390
0
votes
2
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4.4k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 4.0 years ago by • 0
9
votes
14
replies
11k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 18 months ago by 4.3k • written 4.0 years ago by ▴ 40
0
votes
2
replies
2.7k
views
Can't convert dog ensembl IDs into gene names
biomaRt ensembldb
updated 4.1 years ago by ★ 5.0k • written 4.1 years ago by • 0
0
votes
3
replies
2.1k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb
updated 4.1 years ago by ★ 2.1k • written 4.1 years ago by • 0
1
vote
0
replies
1.3k
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
4.2 years ago mchakiachvili ▴ 20
0
votes
1
reply
1.6k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 4.2 years ago by • 0
103 results • Page 1 of 3
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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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