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Comment: WGCNA analysis on RNAseq and proteoimcs data
by
sum31278
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Hi sagigordon,
Can you share how you performed WGCNA analysis for proteomics data?
Thanks
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inadequate.peacock.iiag
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I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
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Gordon Smyth
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It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design
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James W. MacDonald
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You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
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James W. MacDonald
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Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix:
```
> targets
ID Name phase G…
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