Showing : Gene • reset
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636
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gene aligning reference
geneRecommender gene
updated 23 months ago by 68k • written 23 months ago by • 0
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0
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835
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
2.5 years ago Priya • 0
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2
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1.5k
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
2.5 years ago Liliian • 0
3
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2
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962
views
please resolve the issue
gene ExpressionData
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
1
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4
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1.4k
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
3.0 years ago faiza • 0
0
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1
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1.6k
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.1 years ago by ▴ 50 • written 3.2 years ago by ▴ 20
0
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2
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5.9k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 3.6 years ago by ▴ 20 • written 3.6 years ago by • 0
0
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2
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2.5k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86 gene
3.6 years ago beslinail • 0
0
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0
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798
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Gene expression changes in one condition
RNASeq Gene ExpressionData
4.0 years ago AZ ▴ 30
6
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7
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3.4k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 4.0 years ago by 68k • written 4.0 years ago by ▴ 50
1
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2
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1.1k
views
gene ontologies for a set of genes
gene ontology
4.2 years ago Bogdan ▴ 670
0
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0
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945
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TFutils database
TFutils mouse gene convert
4.4 years ago nicocillari • 0
0
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2
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1.5k
views
I want to use global test.
gene r clst rpy globaltest
4.6 years ago Kim • 0
1
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3
replies
2.6k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 4.9 years ago by ▴ 220 • written 5.0 years ago by • 0
0
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3
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1.8k
views
PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 5.5 years ago by ▴ 130 • written 5.5 years ago by ▴ 10
0
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4
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1.6k
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
2
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4
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1.5k
views
Joint pathway Analysis using both gene and metabolite data sets
data integration gene metabolite
5.6 years ago emisecherre • 0
9
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10
replies
2.4k
views
Mapping of GENE symbols into ENTREZ
limma annotation Gene
6.1 years ago • updated 5.7 years ago omarrafiqued ▴ 50
1
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4
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1.6k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 6.2 years ago by ★ 1.4k • written 6.2 years ago by • 0
5
votes
5
replies
2.8k
views
threeUTRsByTranscript per GENE
GenomicFeatures Transcript gene threeUTRsByTranscript
updated 4.7 years ago by ★ 1.6k • written 6.2 years ago by ▴ 10
2
votes
5
replies
1.9k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2 gene format
6.3 years ago miriam.mueller • 0
3
votes
3
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1.8k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.3 years ago by 68k • written 6.3 years ago by • 0
6
votes
2
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3.0k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 6.5 years ago by 53k • written 6.5 years ago by ▴ 60
0
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2
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4.4k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
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5
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7.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 10.0 years ago by 43k • written 10.0 years ago by ▴ 10
3
votes
2
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4.1k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 10.6 years ago by ▴ 30 • written 10.6 years ago by ▴ 20
26 results • Page 1 of 1
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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