Showing : Gene • reset
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657
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gene aligning reference
geneRecommender gene
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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0
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856
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
2.7 years ago Priya • 0
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2
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1.5k
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
2.7 years ago Liliian • 0
3
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2
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991
views
please resolve the issue
gene ExpressionData
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
1
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4
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1.5k
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
3.1 years ago faiza • 0
0
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1
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1.7k
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.3 years ago by ▴ 50 • written 3.3 years ago by ▴ 20
0
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2
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6.1k
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Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 3.7 years ago by ▴ 20 • written 3.8 years ago by • 0
0
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2
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2.6k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86 gene
3.7 years ago beslinail • 0
0
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0
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830
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Gene expression changes in one condition
RNASeq Gene ExpressionData
4.1 years ago AZ ▴ 30
6
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7
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3.5k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 4.1 years ago by 68k • written 4.1 years ago by ▴ 50
1
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2
replies
1.2k
views
gene ontologies for a set of genes
gene ontology
4.3 years ago Bogdan ▴ 670
0
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0
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978
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TFutils database
TFutils mouse gene convert
4.5 years ago nicocillari • 0
0
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2
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1.5k
views
I want to use global test.
gene r clst rpy globaltest
4.7 years ago Kim • 0
1
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3
replies
2.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 5.0 years ago by ▴ 220 • written 5.1 years ago by • 0
0
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3
replies
1.9k
views
PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 5.6 years ago by ▴ 130 • written 5.6 years ago by ▴ 10
0
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4
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1.7k
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 5.7 years ago by ★ 4.0k • written 5.7 years ago by • 0
2
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4
replies
1.5k
views
Joint pathway Analysis using both gene and metabolite data sets
data integration gene metabolite
5.7 years ago emisecherre • 0
9
votes
10
replies
2.4k
views
Mapping of GENE symbols into ENTREZ
limma annotation Gene
6.3 years ago • updated 5.8 years ago omarrafiqued ▴ 50
1
vote
4
replies
1.7k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 6.3 years ago by ★ 1.4k • written 6.3 years ago by • 0
5
votes
5
replies
2.8k
views
threeUTRsByTranscript per GENE
GenomicFeatures Transcript gene threeUTRsByTranscript
updated 4.8 years ago by ★ 1.6k • written 6.3 years ago by ▴ 10
2
votes
5
replies
1.9k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2 gene format
6.4 years ago miriam.mueller • 0
3
votes
3
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1.8k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
6
votes
2
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3.1k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 60
0
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2
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4.5k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
0
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5
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7.3k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 10.1 years ago by 43k • written 10.1 years ago by ▴ 10
3
votes
2
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4.2k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 10.7 years ago by ▴ 30 • written 10.7 years ago by ▴ 20
26 results • Page 1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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