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OpenCyto
•
reset
1
vote
9
replies
3.2k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
8.4 years ago • updated 8.3 years ago
anders.tondell
▴ 30
5
votes
4
replies
3.1k
views
openCyto: Using combination gates (boolean gates)
opencyto
opencyto gating
FlowJo
updated 9.3 years ago by
Greg Finak
▴ 150 • written 9.3 years ago by
juancamilos
▴ 10
4
votes
8
replies
2.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust
opencyto
opencyto gating
updated 8.4 years ago by
Greg Finak
▴ 240 • written 8.5 years ago by
Viktor Thiel
• 0
0
votes
4
replies
2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite
openCyto
package installation
updated 6.2 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
Robert Baer
▴ 70
0
votes
1
reply
2.6k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 6.9 years ago by
Jiang, Mike
★ 1.3k • written 6.9 years ago by
Maria
• 0
0
votes
1
reply
2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating
opencyto
flowcore
flowworkspace
updated 8.0 years ago by
Jiang, Mike
★ 1.3k • written 8.0 years ago by
anara92
• 0
0
votes
3
replies
2.0k
views
openCyto: compilation failure during installation
opencyto
rhdf5
compilation error
8.4 years ago • updated 8.3 years ago
gmirkin
• 0
0
votes
5
replies
2.0k
views
openCyto fails to load
opencyto
bioclite
updated 8.5 years ago by
yang.chen
• 0 • written 8.5 years ago by
pavitrarc
▴ 20
1
vote
5
replies
1.9k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
justinyi10
▴ 10
2
votes
5
replies
1.9k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace
opencyto
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
justinyi10
▴ 10
0
votes
1
reply
1.9k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.2 years ago
Jiang, Mike
★ 1.3k
1
vote
5
replies
1.8k
views
openCyto - flowclust.2d throws errors
opencyto
flow cytometry
updated 8.0 years ago by
bmuchmore
• 0 • written 8.0 years ago by
Ulrik Stervbo
▴ 30
5
votes
11
replies
1.8k
views
polyFunctions gate in OpenCyto 1.20
opencyto
polyfunctions
polyfunctionsGate
updated 5.0 years ago by
Jiang, Mike
★ 1.3k • written 5.0 years ago by
k.teijgeler
• 0
3
votes
3
replies
1.8k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto
flowcore
flow cytometry
updated 5.6 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
Andrew Box
▴ 10
1
vote
0
replies
1.7k
views
Issue with flowDensity on OpenCyto
flowClust
openCyto
flowDensity
flowClust
openCyto
flowDensity
9.7 years ago
Jiang, Mike
★ 1.3k
2
votes
1
reply
1.7k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace
opencyto
updated 8.1 years ago by
lovetatting
▴ 10 • written 8.1 years ago by
wir.traumen
▴ 10
0
votes
6
replies
1.7k
views
opencyto Error in .validity_check_alias
opencyto
updated 6.6 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
biomiha
▴ 20
4
votes
1
reply
1.7k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
9.6 years ago
Greg Finak
▴ 150
0
votes
4
replies
1.6k
views
Issues parsing workspace in openCyto
opencyto
8.8 years ago
JK
▴ 10
0
votes
6
replies
1.5k
views
How to select left hand side of mindensity2 gate
openCyto
mindensity
updated 5.3 years ago by
Jiang, Mike
★ 1.3k • written 5.3 years ago by
biomiha
▴ 20
1
vote
4
replies
1.5k
views
openCyto trouble importing xml file
opencyto
bioconductor
R
7.4 years ago
Rivka
• 0
1
vote
5
replies
1.5k
views
custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto
registerPlugin
gatingMethod
minDensity
4.8 years ago • updated 4.7 years ago
k.teijgeler
• 0
0
votes
1
reply
1.4k
views
OpenCyto
Cancer
eisa
openCyto
Cancer
eisa
openCyto
9.9 years ago
Jiang, Mike
★ 1.3k
0
votes
7
replies
1.4k
views
RefGate populations switched in OpenCyto 1.20
RefGate
OpenCyto
updated 5.3 years ago by
Jiang, Mike
★ 1.3k • written 5.4 years ago by
k.teijgeler
• 0
1
vote
3
replies
1.4k
views
OpenCyto - getting gate coordinates
opencyto
8.0 years ago
Ulrik Stervbo
▴ 30
0
votes
0
replies
1.4k
views
openCyto transitional gate
flow cytometry
opencyto
9.1 years ago
Jiang, Mike
★ 1.3k
2
votes
4
replies
1.4k
views
Parsing flowWorkspace data
opencyto
R
flowworkspace
bioconductor
updated 7.4 years ago by
Jiang, Mike
★ 1.3k • written 7.4 years ago by
Rivka
• 0
0
votes
0
replies
1.3k
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
9.2 years ago
Jiang, Mike
★ 1.3k
7
votes
3
replies
1.3k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add
quadGate
openCyto
updated 4.0 years ago by
Jake Wagner
▴ 310 • written 4.0 years ago by
alavy
▴ 30
1
vote
1
reply
1.2k
views
Add flowclust gate to gatingset
opencyto
flowclust
updated 6.9 years ago by
Jiang, Mike
★ 1.3k • written 6.9 years ago by
pavitrarc
▴ 20
0
votes
1
reply
1.2k
views
using flowIncubator package's function
opencyto
flow cytometry
R
package installation
updated 7.8 years ago by
Jiang, Mike
★ 1.3k • written 7.8 years ago by
anara92
• 0
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry
opencyto
8.3 years ago
Jiang, Mike
★ 1.3k
4
votes
5
replies
1.1k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 4.1 years ago by
Jake Wagner
▴ 310 • written 4.1 years ago by
stefankolling+github
• 0
2
votes
1
reply
1.1k
views
openCyto displaying gating panels
opencyto
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
Rivka
• 0
2
votes
1
reply
1.0k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto
bioconductor
opencyto gating
updated 7.3 years ago by
Jiang, Mike
★ 1.3k • written 7.3 years ago by
Rivka
• 0
0
votes
0
replies
928
views
Bioconductor Digest, Vol 134, Issue 10
openCyto
flowDensity
openCyto
flowDensity
10.1 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
885
views
Fail to load openCyto
opencyto
bioconductor
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
justinyi10
▴ 10
0
votes
1
reply
690
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 4.0 years ago by
Jake Wagner
▴ 310 • written 4.1 years ago by
noviello
• 0
0
votes
2
replies
678
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto
register_plugins
gs_add_gating_method
4.0 years ago • updated 3.9 years ago
geoffreylewen
• 0
1
vote
1
reply
621
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry
Opencyto
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
Noël
• 0
0
votes
0
replies
553
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
18 months ago
Dennis.hinkel
• 0
0
votes
0
replies
458
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
18 months ago
Noël
• 0
0
votes
0
replies
448
views
openCyto 2.8.0: error in prior_flowclust
prior_flowclust
openCyto
23 months ago
martin.andres
• 0
0
votes
0
replies
297
views
OpenCyto polyFunctions
openCyto
9 months ago
Albert
• 0
44 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
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Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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