Showing : OpenCyto • reset
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297
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OpenCyto polyFunctions
openCyto
9 months ago Albert • 0
0
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0
replies
553
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How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
18 months ago Dennis.hinkel • 0
1
vote
1
reply
620
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
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0
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458
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
0
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0
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447
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openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
23 months ago martin.andres • 0
0
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2
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678
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openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
4.0 years ago • updated 3.9 years ago geoffreylewen • 0
7
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3
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1.3k
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Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 4.0 years ago by ▴ 310 • written 4.0 years ago by ▴ 30
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5
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1.1k
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.1 years ago by ▴ 310 • written 4.1 years ago by • 0
0
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1
reply
690
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FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.0 years ago by ▴ 310 • written 4.1 years ago by • 0
1
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5
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1.5k
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custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
4.7 years ago k.teijgeler • 0
5
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11
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1.8k
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polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 5.0 years ago by ★ 1.3k • written 5.0 years ago by • 0
0
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6
replies
1.5k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by ▴ 20
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7
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1.4k
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RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 5.3 years ago by ★ 1.3k • written 5.4 years ago by • 0
3
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3
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1.8k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 5.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 10
0
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6
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1.7k
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opencyto Error in .validity_check_alias
opencyto
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 20
0
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4
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2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.2 years ago by ★ 1.3k • written 6.6 years ago by ▴ 70
2
votes
5
replies
1.9k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
1
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5
replies
1.9k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
0
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1
reply
885
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Fail to load openCyto
opencyto bioconductor
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
0
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1
reply
2.6k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by • 0
1
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1
reply
1.2k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 20
2
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1
reply
1.1k
views
openCyto displaying gating panels
opencyto
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
2
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1
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1.0k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
2
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4
replies
1.4k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
1
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4
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1.5k
views
openCyto trouble importing xml file
opencyto bioconductor R
7.4 years ago Rivka • 0
0
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1
reply
1.2k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
0
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1
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2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
1
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3
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1.4k
views
OpenCyto - getting gate coordinates
opencyto
8.0 years ago Ulrik Stervbo ▴ 30
1
vote
5
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1.8k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 30
2
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1
reply
1.7k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.1 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
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1
reply
1.9k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.2 years ago Jiang, Mike ★ 1.3k
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
1
vote
9
replies
3.2k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
8.4 years ago • updated 8.3 years ago anders.tondell ▴ 30
0
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3
replies
2.0k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
8.4 years ago • updated 8.3 years ago gmirkin • 0
4
votes
8
replies
2.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 8.4 years ago by ▴ 240 • written 8.5 years ago by • 0
0
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5
replies
2.0k
views
openCyto fails to load
opencyto bioclite
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 20
0
votes
4
replies
1.6k
views
Issues parsing workspace in openCyto
opencyto
8.8 years ago JK ▴ 10
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0
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1.4k
views
openCyto transitional gate
flow cytometry opencyto
9.1 years ago Jiang, Mike ★ 1.3k
0
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0
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1.3k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.2 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.1k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 9.3 years ago by ▴ 150 • written 9.3 years ago by ▴ 10
4
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1
reply
1.7k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
1
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0
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1.7k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
9.7 years ago Jiang, Mike ★ 1.3k
0
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1
reply
1.4k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
9.9 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
928
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
10.1 years ago Jiang, Mike ★ 1.3k
44 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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