Showing : RNA • reset
0
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4
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5.0k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 8.2 years ago by 42k • written 8.2 years ago by • 0
6
votes
5
replies
3.9k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 20
4
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3
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2.2k
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
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3
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2.2k
views
Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 10
3
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6
replies
2.0k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
17 months ago Sara • 0
3
votes
6
replies
1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.1 years ago by ▴ 20
3
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1
reply
1.7k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 7.6 years ago by ★ 28k • written 7.6 years ago by • 0
1
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2
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1.6k
views
Is it necessary to standardize Combat in R?
RNA Combat sva R
24 months ago • updated 23 months ago takemoto • 0
0
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0
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1.5k
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
7.1 years ago Walter F. Baumann ▴ 10
5
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5
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1.4k
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 5.1 years ago by ★ 28k • written 5.1 years ago by ▴ 20
0
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1
reply
1.4k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 6.8 years ago by 42k • written 6.8 years ago by ▴ 20
1
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1
reply
1.3k
views
how to filter genes in significant module?
RNA WGCNA filter
4.8 years ago modarzi ▴ 10
1
vote
1
reply
1.3k
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by ▴ 30
0
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4
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1.3k
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
3.1 years ago Nirad ▴ 10
5
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4
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1.3k
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 7.0 years ago by • 0 • written 7.0 years ago by ▴ 40
0
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2
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1.3k
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
9.6 years ago aristotele_m ▴ 40
0
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6
replies
1.3k
views
Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 4.2 years ago by 42k • written 4.2 years ago by • 0
2
votes
7
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1.2k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
2
votes
3
replies
1.2k
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 5.1 years ago by ★ 13k • written 5.1 years ago by ▴ 20
0
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2
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1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 13 months ago by ★ 2.0k • written 13 months ago by • 0
2
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1
reply
1.0k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 23 months ago by 50k • written 23 months ago by • 0
0
votes
1
reply
991
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 6.7 years ago by 42k • written 6.7 years ago by ▴ 20
1
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0
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947
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
5.5 years ago l.brown ▴ 10
0
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0
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943
views
R code for finding wobble/redundant positions in an RNA string
r code rna wobble
6.2 years ago fawazfebin ▴ 60
0
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2
replies
888
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 10
0
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1
reply
872
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.3 years ago by ★ 4.1k • written 2.3 years ago by • 0
0
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2
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839
views
Rsubread align --R session aborts
RNA Alignment Rsubread
21 months ago • updated 20 months ago sreekalasn • 0
2
votes
1
reply
821
views
DESeq2 statistic and design
deseq2 RNA
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 10
0
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0
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816
views
Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
4.8 years ago jmaanaki • 0
1
vote
1
reply
791
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 4.0 years ago by 42k • written 4.0 years ago by • 0
1
vote
1
reply
784
views
Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 2.2 years ago by ▴ 90 • written 2.2 years ago by ▴ 10
0
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0
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779
views
Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
20 months ago António Miguel de Jesus Domingues ▴ 510
1
vote
1
reply
714
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 20 months ago by ★ 4.1k • written 20 months ago by ▴ 30
0
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0
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601
views
Cross-cultivar RNA-seq analysis
RNA Normalization
3.0 years ago nancy • 0
0
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0
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534
views
Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
18 months ago rridley3 • 0
0
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5
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500
views
Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 11 weeks ago by 65k • written 3 months ago by • 0
0
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1
reply
289
views
Running Deseq2 with all samples vs samples for each comparison separately
RNA DESeq2
updated 3 months ago by 42k • written 3 months ago by • 0
37 results • Page 1 of 1
Recent ...
Replies
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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