Showing : annotation • reset
0
votes
6
replies
361
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 5 weeks ago by ▴ 180 • written 6 weeks ago by • 0
2
votes
1
reply
229
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 7 weeks ago by ★ 4.0k • written 7 weeks ago by ▴ 10
0
votes
0
replies
191
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
3 months ago nilanjanamani88 • 0
2
votes
7
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2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 4 months ago by • 0 • written 3.7 years ago by • 0
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.4 years ago by ★ 13k
5
votes
11
replies
4.2k
views
How to annotate gene names for genomic coordinates?
annotation
written 8.9 years ago by • 0
0
votes
1
reply
984
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
1
vote
4
replies
1.6k
views
Problem installing annotation packages AnnotationDbi & BiocFileCache
software error annotation
written 4.2 years ago by • 0
0
votes
1
reply
495
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
1
vote
0
replies
436
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
0
votes
1
reply
1.5k
views
Doubts regarding Pathview
Annotation pathview Annotation pathview
written 9.8 years ago by ★ 1.6k
0
votes
1
reply
3.7k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 8 months ago by 65k • written 8 months ago by • 0
3
votes
4
replies
693
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 10 months ago by 65k • written 10 months ago by • 0
2
votes
4
replies
971
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
0
votes
4
replies
1.2k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
12 months ago Michael Steinbaugh ▴ 90
0
votes
2
replies
732
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 12 months ago by 65k • written 12 months ago by • 0
0
votes
2
replies
9.0k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 13 months ago by • 0 • written 4.1 years ago by • 0
0
votes
0
replies
538
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
13 months ago ahiser • 0
0
votes
3
replies
740
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
13 months ago christian.dina • 0
0
votes
0
replies
674
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
14 months ago kayla.interdonato ▴ 160
4
votes
8
replies
6.2k
views
gene ID conversion
annotation
updated 15 months ago by ★ 3.9k • written 4.1 years ago by ▴ 20
0
votes
7
replies
1.4k
views
athPkgBuilder data source :missing probesets
Annotation Annotation
written 17.8 years ago by ▴ 870
2
votes
1
reply
541
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 15 months ago by 65k • written 15 months ago by • 0
1
vote
6
replies
2.2k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 15 months ago by • 0 • written 3.7 years ago by • 0
0
votes
1
reply
836
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 15 months ago by 65k • written 15 months ago by ▴ 50
3
votes
3
replies
1.1k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 15 months ago by ★ 4.0k • written 15 months ago by ▴ 10
0
votes
1
reply
547
views
Bioconductor tool for curating annotations?
Annotation
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 180
3
votes
2
replies
2.1k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
15 months ago m-bihie ▴ 10
2
votes
3
replies
1.8k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 15 months ago by • 0 • written 18 months ago by ▴ 10
1
vote
9
replies
1.3k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 15 months ago by 65k • written 16 months ago by • 0
0
votes
3
replies
902
views
A look inside annotation packages
Annotation
17 months ago Ed Siefker ▴ 230
1
vote
2
replies
6.3k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 17 months ago by ▴ 20 • written 6.4 years ago by • 0
0
votes
5
replies
2.1k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 19 months ago by ★ 4.0k • written 19 months ago by ▴ 30
0
votes
0
replies
648
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
19 months ago kayla.interdonato ▴ 160
0
votes
1
reply
606
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 20 months ago by 65k • written 20 months ago by • 0
0
votes
2
replies
2.0k
views
getBM error in the biomaRt R package
Annotation
updated 21 months ago by • 0 • written 2.5 years ago by • 0
4
votes
4
replies
2.7k
views
Retrieve canonical transcript for each gene via ensembldb R package
annotation ensembldb
updated 21 months ago by ▴ 40 • written 5.3 years ago by • 0
1
vote
3
replies
1.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 22 months ago by 65k • written 23 months ago by ▴ 60
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.1 years ago by ▴ 50 • written 4.7 years ago by ★ 3.9k
0
votes
1
reply
830
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.1 years ago kayla.interdonato ▴ 160
0
votes
1
reply
816
views
peak annotation
ChIPpeakAnno Annotation
updated 2.1 years ago by ▴ 70 • written 2.2 years ago by ▴ 670
0
votes
0
replies
623
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.1 years ago Ava • 0
0
votes
10
replies
2.9k
views
gene set enrichment
Annotation Organism Annotation Organism
updated 2.2 years ago by 50k • written 11.5 years ago by ▴ 220
14
votes
19
replies
19k
views
DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
updated 2.3 years ago by ▴ 60 • written 9.6 years ago by ▴ 120
3
votes
9
replies
5.2k
views
LOC gene IDs for characterised genes in annotation files
Annotation RNAseq
updated 2.3 years ago by • 0 • written 3.0 years ago by • 0
0
votes
0
replies
696
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.3 years ago Amandeep • 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.5 years ago by • 0
0
votes
1
reply
1.3k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 2.3 years ago by 3.9k • written 2.3 years ago by ▴ 20
0
votes
0
replies
717
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
2.4 years ago Ahdee ▴ 50
0
votes
8
replies
4.1k
views
failling to install biomaRt
annotation
updated 2.5 years ago by • 0 • written 4.3 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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