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Showing :
biomart
•
reset
22
votes
15
replies
7.6k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 6 months ago by
Marie
▴ 10 • written 2.1 years ago by
Dina
▴ 50
21
votes
24
replies
13k
views
Problem with biomart's listMarts function
biomart
bug
updated 8.0 years ago by
Paul Shannon
▴ 470 • written 8.5 years ago by
Johannes Rainer
★ 2.0k
21
votes
34
replies
8.5k
views
Biomart error when updating to R 4.0.2
Biomart
updated 3.6 years ago by
Mike Smith
★ 6.5k • written 3.6 years ago by
landenshanie
▴ 40
19
votes
4
replies
5.5k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 8.5 years ago by
hygine
▴ 140 • written 8.5 years ago by
enricoferrero
▴ 660
13
votes
8
replies
16k
views
how to use biomaRt with ensembl build 37
biomaRt
ensembl
GRCh37
updated 9.6 years ago by
Thomas Maurel
▴ 800 • written 9.6 years ago by
Pablo marin-garcia
▴ 90
11
votes
5
replies
4.0k
views
Scan error using biomart with version option
biomart
updated 6.3 years ago by
Mike Smith
★ 6.5k • written 6.4 years ago by
Chris Stubben
▴ 40
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
4.9 years ago
m93
▴ 10
10
votes
6
replies
3.7k
views
Coding vs Noncoding Genes in Hit List
biomaRt
coding vs noncoding
high throughput
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
Steve Lowe
▴ 30
10
votes
5
replies
6.2k
views
Error: This function only works when used with the ensembl BioMart.
biomart
error
8.5 years ago
anchel.gonzalez
• 0
10
votes
10
replies
7.4k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 8 weeks ago by
juo5
• 0 • written 6 months ago by
Abhishek
▴ 10
9
votes
4
replies
5.1k
views
How to access Emsembl plants with biomaRt
biomart
8.5 years ago
naholi.alejandri
▴ 50
9
votes
1
reply
2.3k
views
News:
Ensembl release 80 is out!
biomart
Ensembl
zebrafish
Rat
1000 genomes phase 3
News
updated 9.0 years ago by
Sonali Arora
▴ 390 • written 9.0 years ago by
Thomas Maurel
▴ 800
9
votes
9
replies
3.8k
views
biomaRt error when connecting to host
biomart
host
connection
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.1 years ago by
Assa Yeroslaviz
★ 1.5k
8
votes
5
replies
5.3k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl
symbol
hgnc
biomart
updated 5.0 years ago by
James W. MacDonald
65k • written 5.0 years ago by
foehn
▴ 100
8
votes
8
replies
2.9k
views
biomaRt: drerio_gene_ensembl dataset missing
biomart
ensembl
ripseeker
updated 6.4 years ago by
Mike Smith
★ 6.5k • written 6.4 years ago by
António Miguel de Jesus Domingues
▴ 510
8
votes
10
replies
1.6k
views
Genes listed in GO categories
goseq
biomart
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
frezende
• 0
7
votes
6
replies
4.3k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 7 months ago by
Marcel Ramos
700 • written 21 months ago by
Recep
▴ 20
7
votes
5
replies
7.1k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 7 months ago by
Ke
• 0 • written 2.0 years ago by
kieran.short
▴ 40
7
votes
4
replies
5.7k
views
biomaRt question for GO term search
biomaRt
GO term
updated 13 months ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
Taiki Tsutsui
▴ 10
7
votes
2
replies
5.8k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 6.3 years ago by
Mike Smith
★ 6.5k • written 6.3 years ago by
Gregulator
▴ 30
6
votes
6
replies
2.3k
views
Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve gene symbols
biomaRt
annnotation
RNASeq
AnnotationDbi
3.0 years ago
svlachavas
▴ 830
6
votes
6
replies
1.9k
views
GenomicFeatures makeTxDbFromBiomart fails with "unkown species" error
biomart
maketxdbfrombiomart
genomicfeatures
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
kaur.alasoo
▴ 30
6
votes
7
replies
2.0k
views
Inconsistencies in biomart results
biomart
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.8 years ago by
Laurent Gatto
1.6k
6
votes
7
replies
2.0k
views
Requesting flank sequences (BioMart::Exception)
biomart
plants_mart
updated 3.2 years ago by
lessismore
▴ 20 • written 8.0 years ago by
pbarros
• 0
6
votes
12
replies
5.4k
views
Error in getBM of biomaRt package
biomaRt
getBM
updated 7.1 years ago by
boris.steipe
• 0 • written 7.3 years ago by
rubi
▴ 110
6
votes
18
replies
3.4k
views
biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
bioconductor
biomart
problem with connection
updated 8.0 years ago by
Dan Staines
▴ 70 • written 8.0 years ago by
juan-pablo.cerapio-arroyo
▴ 10
6
votes
19
replies
7.9k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
9.6 years ago
k.askland
▴ 20
6
votes
1
reply
3.1k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing
Annotation
convert
biomaRt
ReportingTools
DESeq2
Sequencing
Annotation
convert
updated 9.4 years ago by
andrew.j.skelton73
▴ 370 • written 10.4 years ago by
Jason Hackney
▴ 160
6
votes
11
replies
1.8k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r
biomart
SNP
annotation
HUGO
updated 3.8 years ago by
Mike Smith
★ 6.5k • written 3.8 years ago by
aroso491
• 0
6
votes
5
replies
8.0k
views
biomaRt: error using useDataset or useMart
software error
biomart
usemart
usedataset
updated 6.4 years ago by
Mike Smith
★ 6.5k • written 6.4 years ago by
lpsantamaria
▴ 40
6
votes
1
reply
1.3k
views
biomart R code cannot retrieve gene symbol
biomart
ensemblbiomart
ensemble mart
6.1 years ago
emmak
▴ 20
6
votes
2
replies
3.0k
views
The query to the BioMart webservice returned an invalid result: the number of columns in the result table does not equal the number of attributes in …
biomart
number of columns in the result table does not equal the number of attributes in the query
updated 6.4 years ago by
thokall
▴ 160 • written 6.4 years ago by
ang
▴ 20
6
votes
5
replies
2.7k
views
biomaRt returns all NAs for hgnc_symbol
biomaRt
updated 5.1 years ago by
Mike Smith
★ 6.5k • written 5.1 years ago by
foehn
▴ 100
6
votes
9
replies
862
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 3 months ago by
alexander3
• 0 • written 3 months ago by
Amparo
• 0
6
votes
7
replies
5.4k
views
BiomaRt workaround when Biomart server closed
biomart
updated 8.5 years ago by
Sarai.Mola
• 0 • written 8.5 years ago by
s.corley
▴ 30
5
votes
3
replies
3.7k
views
Please use the function 'listAttributes' to get valid attribute names
r
biomart
6.8 years ago
al14
• 0
5
votes
8
replies
14k
views
Ensembl site unresponsive
ensembl
biomart
updated 3.1 years ago by
tommaso.gastaldi
• 0 • written 3.6 years ago by
lirongrossmann
▴ 40
5
votes
3
replies
1.5k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt
ensembldb
ensembl
19 months ago • updated 16 months ago
jamie.gearing
▴ 60
5
votes
5
replies
2.1k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
2.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.8 years ago by
Sonali Arora
▴ 390 • written 8.8 years ago by
Thomas Maurel
▴ 800
5
votes
4
replies
1.6k
views
Biomart: Error in getLDS
Biomart
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
Carsten
▴ 10
5
votes
2
replies
10k
views
Probe to gene id conversion
annotate
biomart
probe to gene id
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
rafi A
▴ 20
5
votes
4
replies
2.8k
views
biomaRT GO-ID retreival showing different genes than AmiGO
biomart
go
updated 7.4 years ago by
Mike Smith
★ 6.5k • written 7.4 years ago by
snamjoshi87
▴ 40
5
votes
5
replies
2.0k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics
chipseq
biomart
shortread
convert
biomaRt
9.7 years ago
patrick.schordert
▴ 30
5
votes
5
replies
4.2k
views
SNP Function Information from biomaRt
biomart
snp
nonsynonymous
updated 9.6 years ago by
Sean Davis
21k • written 9.6 years ago by
Ting
▴ 10
5
votes
3
replies
1.6k
views
biomarRt for fungi
biomaRt
updated 5.4 years ago by
Mike Smith
★ 6.5k • written 5.4 years ago by
sunjae.lee
▴ 20
5
votes
7
replies
3.3k
views
Biomart getLDS error
biomart
getLDS
orthlog
updated 7.6 years ago by
Thomas Maurel
▴ 800 • written 7.6 years ago by
Diwan
• 0
5
votes
11
replies
1.7k
views
an error in BioMart regarding gene annotations
biomart
AnnotationDbi
updated 5.9 years ago by
daniel.vantwisk
▴ 50 • written 5.9 years ago by
Bogdan
▴ 670
5
votes
16
replies
3.4k
views
biomaRt error in getBM for hsapiens_gene_ensembl
biomart
updated 6.4 years ago by
romicakerketta
• 0 • written 6.4 years ago by
rbacher
▴ 20
5
votes
6
replies
2.5k
views
Reactome pathway names from IDs?
biomart
reactome
reactome.db
id
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
enricoferrero
▴ 660
50 results • Page
1 of 1
Recent ...
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Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
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by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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