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cancer
•
reset
0
votes
1
reply
11k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer
Cancer
written 10.4 years ago by
Cheng, Yong-Sheng
▴ 10
0
votes
1
reply
511
views
BioC packages in cancer genomics
genomics
cancer
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
Bogdan
▴ 670
0
votes
0
replies
531
views
Job:
Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions
cancer
networks
machine_learning
13 months ago
Colm
• 0
0
votes
0
replies
668
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer
bioinformatics
proteomics
genomics
phd
16 months ago
DKFZ International PhD Program
▴ 10
1
vote
0
replies
707
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
20 months ago
Andy Lynch
▴ 120
0
votes
0
replies
703
views
Calculating tumour purity having only CNA data
PureCN
CNA
purity
cancer
21 months ago
JAcky
• 0
0
votes
0
replies
699
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
21 months ago
Sarah
• 0
0
votes
1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
Cancer
GUI
Cancer
written 20.1 years ago by
A.J. Rossini
▴ 810
1
vote
0
replies
705
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd
cancer
genomics
proteomics
bioinformatics
23 months ago
DKFZ International PhD Program
▴ 10
0
votes
1
reply
677
views
WGCNA
Cancer
updated 2.4 years ago by
Basti
▴ 750 • written 2.4 years ago by
aikaterinilama
• 0
0
votes
0
replies
812
views
Job:
Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia
cancer
wehi
2.9 years ago • updated 2.6 years ago
Gordon Smyth
50k
0
votes
0
replies
816
views
Job:
Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer
postdoc
biomarkers
Biobase
3.0 years ago
Daniel Brewer
▴ 100
0
votes
0
replies
872
views
Job:
Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase
bioinformatics
biomarkers
cancer
3.3 years ago
Daniel Brewer
▴ 100
0
votes
0
replies
913
views
Job:
Postdoctoral Data Scientist @ Oxford University, UK
Cancer
CancerSubtypes
postdoc
3.4 years ago
Daniel Brewer
▴ 100
2
votes
13
replies
1.3k
views
Sample size imbalance in a multi-regional experiment
deseq2
cancer
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
bioconductor_user_1675
• 0
4
votes
7
replies
1.4k
views
Limma sample groups
microarray
limma
affy
cancer
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
nancy.nassar1590
• 0
0
votes
5
replies
1.9k
views
TCGA: to extract clinical data from barcode
cancer
TCGAbiolinks
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
Marie DENIS
▴ 10
1
vote
6
replies
2.0k
views
TCGA: clinical data and expression data
microarray
annotation
cancer
updated 13 months ago by
Sharif
• 0 • written 3.5 years ago by
641549298
• 0
0
votes
5
replies
1.9k
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2
cancer
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
rezashiralmohammad
• 0
0
votes
0
replies
781
views
Job:
Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer
nextgenerationsequencing
prostate
Job
4.1 years ago • updated 3.8 years ago
Daniel Brewer
▴ 100
4
votes
10
replies
2.4k
views
how to analyze WGCNA results?
cancer
probe
deseq2
annotation
normalization
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
rajpal22288
▴ 10
1
vote
2
replies
3.7k
views
Partial NA coefficients for 10 probe(s) Limma
limma
microarray
cancer
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
everardoremi
• 0
0
votes
3
replies
1.2k
views
Topgo, Deseq and KEGG pathway
annotation
cancer
updated 4.0 years ago by
shepherl
3.8k • written 4.0 years ago by
Nas 1989
• 0
0
votes
1
reply
940
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.0 years ago by
Peter Langfelder
★ 2.9k • written 4.0 years ago by
sagigordon
• 0
0
votes
0
replies
948
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
4.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
827
views
Job:
Data Sciences Statistician - Dana-Farber Cancer Institute
job
data science
biostatistics
bioinformatics
cancer
Job
4.1 years ago
Patrick Kimes
▴ 10
0
votes
0
replies
912
views
Job:
postdoc position in computational cancer biology in Milan, Italy
cancer
networks
genomics
epigenomics
Job
4.4 years ago • updated 4.2 years ago
marschaefer
• 0
0
votes
0
replies
647
views
Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
4.2 years ago
luciomora8
• 0
0
votes
0
replies
813
views
Job:
Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer
biomarkers
bioinformatician
Job
4.3 years ago
Daniel Brewer
▴ 100
2
votes
3
replies
1.1k
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2
cancer
updated 10 weeks ago by
Shaimaa Gamal
• 0 • written 4.4 years ago by
thanos5541
• 0
0
votes
0
replies
542
views
miRNA and drugs
cancer
4.4 years ago
maria.k.pagoni
• 0
1
vote
0
replies
992
views
Job:
PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer
genomics
deep learning
computational biology
Job
4.5 years ago • updated 4.4 years ago
Shamith.Samarajiwa
▴ 180
1
vote
0
replies
955
views
Job:
Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning
cancer
immunotherapy
computational biology
Job
4.5 years ago • updated 4.4 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
843
views
Job:
Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer
Job
4.5 years ago
Johannes Rainer
★ 2.0k
1
vote
4
replies
1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 4.5 years ago by
k.vitting.seerup
▴ 120 • written 4.5 years ago by
asmita
• 0
2
votes
1
reply
2.3k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer
limma
deseq2
updated 4.5 years ago by
svlachavas
▴ 830 • written 4.5 years ago by
KCLiv
▴ 20
0
votes
0
replies
733
views
Job:
Bioinformatician @ University of Cambridge
cancer
bioinformatics
R
Job
4.5 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
870
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.5 years ago
sheneicechang
• 0
0
votes
0
replies
663
views
News:
Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer
meetup
News
4.5 years ago
Ning Leng
• 0
0
votes
5
replies
1.8k
views
RNA-seq time course analysis with only one experimental condition
deseq2
cancer
rna-seq
time-series
4.7 years ago
mah19
• 0
0
votes
0
replies
784
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
4.7 years ago
hanna_engqvist
• 0
1
vote
0
replies
1.5k
views
Job:
Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer
deep learning
genomics
Job
4.9 years ago • updated 4.8 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
818
views
Job:
Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell
genome
cancer
Job
4.8 years ago
jmaanaki
• 0
0
votes
2
replies
862
views
Chromosomal location mapping for miRNAs
cancer
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
angajalaanusha
▴ 10
0
votes
3
replies
939
views
Is Background Correction necessary before DESeq analysis
deseq2
cancer
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
vivekr
• 0
1
vote
4
replies
925
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2
cancer
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
xuyao15927402897
• 0
4
votes
1
reply
8.3k
views
WGCNA-unable to install GO.db package
go
cancer
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
852108577
▴ 20
0
votes
1
reply
714
views
Help installing netReg
netReg
cancer
5.0 years ago
sbrackett007
• 0
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC
probe
normalization
GEOdata
cancer
5.0 years ago
s.goncalvesclaro
▴ 10
0
votes
0
replies
821
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
5.0 years ago
Shamith.Samarajiwa
▴ 180
50 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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