Showing : expressionSet • reset
6
votes
7
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3.8k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
8.6 years ago martin.hoelzer ▴ 20
3
votes
9
replies
1.5k
views
How many features an ExpressionSet can contain ?
ExpressionSet
23 months ago OE • 0
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 20
5
votes
2
replies
861
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 20
2
votes
5
replies
4.0k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
8.5 years ago thrabe • 0
3
votes
10
replies
2.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
9.2 years ago svlachavas ▴ 830
1
vote
3
replies
2.2k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 7.6 years ago by ▴ 830 • written 7.6 years ago by • 0
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 10
3
votes
5
replies
1.6k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by • 0
1
vote
2
replies
3.0k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 7.5 years ago by 25k • written 7.5 years ago by ★ 4.0k
0
votes
1
reply
936
views
beadarray error conversion
beadarray limma ExpressionSet
updated 7.4 years ago by 50k • written 7.4 years ago by • 0
0
votes
1
reply
1.2k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 7.3 years ago by ▴ 830 • written 7.3 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 60
4
votes
3
replies
1.2k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 6.8 years ago by 65k • written 6.8 years ago by • 0
1
vote
10
replies
1.8k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
1
vote
2
replies
237
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
7 weeks ago Mj.A. • 0
2
votes
1
reply
3.1k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 30
2
votes
4
replies
1.9k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 830
1
vote
2
replies
1.4k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
1
vote
1
reply
1.1k
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
8.1 years ago g_draculla ▴ 10
0
votes
3
replies
2.5k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
8.0 years ago NS ▴ 60
0
votes
1
reply
974
views
ExpressionSet: Internal Standard
expressionset
updated 7.9 years ago by ★ 13k • written 7.9 years ago by • 0
1
vote
1
reply
1.1k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 70
3
votes
2
replies
2.3k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 20
0
votes
1
reply
518
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
4.1 years ago aush ▴ 40
4
votes
8
replies
2.3k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
0
votes
1
reply
695
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 3.4 years ago by 65k • written 3.5 years ago by • 0
8
votes
23
replies
1.0k
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment ExpressionSet
updated 5 weeks ago by ★ 3.3k • written 5 weeks ago by ▴ 40
0
votes
3
replies
2.2k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
2
replies
1.0k
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
4.7 years ago rezashiralmohammad • 0
0
votes
0
replies
988
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
6.2 years ago rf • 0
0
votes
0
replies
867
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.8 years ago jirkanov • 0
0
votes
0
replies
735
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
5.7 years ago payam_delfani1980 • 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
7.3 years ago gabor.halasz • 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
7.3 years ago andreas.pittroff • 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
7.8 years ago Steffen Neumann ▴ 30
36 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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