Showing : expressionset • reset
6
votes
7
replies
3.8k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
8.6 years ago martin.hoelzer ▴ 20
3
votes
9
replies
1.5k
views
How many features an ExpressionSet can contain ?
ExpressionSet
23 months ago • updated 22 months ago OE • 0
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 20
5
votes
2
replies
858
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 20
2
votes
5
replies
3.9k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
8.5 years ago • updated 8.4 years ago thrabe • 0
3
votes
10
replies
2.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
9.1 years ago svlachavas ▴ 830
1
vote
3
replies
2.2k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 7.6 years ago by ▴ 830 • written 7.6 years ago by • 0
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 10
3
votes
5
replies
1.6k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by • 0
1
vote
2
replies
3.0k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 7.5 years ago by 25k • written 7.5 years ago by ★ 3.9k
0
votes
1
reply
928
views
beadarray error conversion
beadarray limma ExpressionSet
updated 7.4 years ago by 50k • written 7.4 years ago by • 0
0
votes
1
reply
1.2k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 7.2 years ago by ▴ 830 • written 7.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 60
4
votes
3
replies
1.2k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 6.8 years ago by 65k • written 6.8 years ago by • 0
1
vote
10
replies
1.8k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
1
vote
2
replies
233
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
6 weeks ago Mj.A. • 0
2
votes
1
reply
3.1k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 30
2
votes
4
replies
1.9k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 830
1
vote
2
replies
1.4k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
1
vote
1
reply
1.0k
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
8.0 years ago g_draculla ▴ 10
0
votes
3
replies
2.5k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
8.0 years ago NS ▴ 60
0
votes
1
reply
974
views
ExpressionSet: Internal Standard
expressionset
updated 7.9 years ago by ★ 13k • written 7.9 years ago by • 0
1
vote
1
reply
1.1k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 70
3
votes
2
replies
2.3k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 20
0
votes
1
reply
514
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
4.1 years ago aush ▴ 40
4
votes
8
replies
2.3k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
0
votes
1
reply
692
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
8
votes
23
replies
984
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment ExpressionSet
updated 29 days ago by ★ 3.3k • written 4 weeks ago by ▴ 40
0
votes
3
replies
2.1k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
2
replies
997
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
4.7 years ago rezashiralmohammad • 0
0
votes
0
replies
982
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
6.2 years ago rf • 0
0
votes
0
replies
862
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.8 years ago jirkanov • 0
0
votes
0
replies
731
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
5.7 years ago payam_delfani1980 • 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
7.3 years ago gabor.halasz • 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
7.3 years ago andreas.pittroff • 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
7.8 years ago Steffen Neumann ▴ 30
36 results • Page 1 of 1
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Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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