Showing : ngs • reset
1
vote
11
replies
2.8k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread BWA NGS
updated 8.0 years ago by ★ 3.6k • written 8.1 years ago by ▴ 10
0
votes
6
replies
13k
views
converting fasta file into bam file
ngs
7.2 years ago nosheenfaiz09 • 0
0
votes
5
replies
4.9k
views
bioconductor package for BWA-MEM ?
bwa ngs
updated 9.1 years ago by 51k • written 9.1 years ago by ▴ 50
1
vote
4
replies
1.8k
views
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
TarSeqQC R ngs biocparallel
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
4
votes
4
replies
2.6k
views
Average read counts and batch-effect correction in edgeR
edgeR batch-effect RNA-seq read counts ngs
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 20
7
votes
4
replies
7.3k
views
how can I tell if a RNAseq BAM file is paired end or single end ?
NGS BAm
updated 9.8 years ago by ▴ 390 • written 9.8 years ago by ▴ 50
1
vote
3
replies
2.0k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.8 years ago by ▴ 210 • written 3.9 years ago by • 0
2
votes
1
reply
1.6k
views
rtracklayer BigBed format
ngs rtracklayer bigbed
updated 5.7 years ago by ★ 11k • written 5.7 years ago by ▴ 100
0
votes
1
reply
1.2k
views
counting reads with muliple hits with SummarizeOverlaps
R seq ngs summarizeoverlaps
updated 6.4 years ago by ★ 6.8k • written 6.5 years ago by • 0
0
votes
1
reply
1.9k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr bigwig coverage ngs
updated 7.0 years ago by ▴ 30 • written 7.0 years ago by • 0
1
vote
0
replies
1.4k
views
Job: Computational Biologist position in CRUK Manchester Institute, UK
bioinformatician job ngs leukemia cancer Job
8.3 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
1.3k
views
Job: Bioinformatician / Statistician Position - Ref.: 2016/45 - in Badalona, Barcelona, Spain
ngs microarray bioinformatician job Job
8.2 years ago Lauro Sumoy ▴ 10
0
votes
0
replies
1.3k
views
Job: Hunting for Human Infectious Agents in Cancer using data from Genomics England's 100,000 genome project : PhD Studentship @ UEA, Norwich
phd cancer pathogens NGS Job
7.4 years ago Daniel Brewer ▴ 100
1
vote
0
replies
1.4k
views
Job: Computational Biologist position in CRUK Manchester Institute, UK
ngs prostate cancer genomics computational biology bioinformatician job Job
7.2 years ago huisun.leong ▴ 10
0
votes
0
replies
1.4k
views
Job: Senior Bioinformatician, Children's Cancer Research Institute Vienna, Austria
postdoc rnaseq NGS WGS bioinformatician job Job
6.6 years ago da.de ▴ 30
0
votes
0
replies
1.3k
views
Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.5 years ago EMBL Recruitment • 0
0
votes
0
replies
1.4k
views
Job: EXTENDED: Bioinformatics Specialist at the University of Illinois
microbiome epigenomics bioinformatics analyst NGS Job
6.5 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
1.1k
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql fastq seqinr ngs sangerseqr
6.4 years ago JoeMG • 0
0
votes
0
replies
2.0k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.2 years ago • updated 3.8 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
982
views
Job: Open position for a bioinformatician in Copenhagen
R NGS Job
6.1 years ago gretchen.repasky ▴ 20
0
votes
0
replies
1.4k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.6 years ago • updated 4.8 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
984
views
Job: Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines NGS Research associate Docker Job
5.2 years ago Daniel Brewer ▴ 100
0
votes
0
replies
1.1k
views
Job: Two bioinformatics positions at Boston Children's Hospital
NGS Job
updated 3.9 years ago by 42k • written 3.9 years ago by • 0
0
votes
0
replies
862
views
Job: Bioinformatics Analyst/Data Science Analyst
bioinformatics ngsReports NGS analyst science
19 months ago marisona.almazan • 0
0
votes
0
replies
787
views
Rsamtools and data.table OR advice of packages
data.table Rsamtools NGS
2.7 years ago sara • 0
0
votes
0
replies
241
views
Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 25 days ago by ▴ 10 • written 29 days ago by ▴ 180
0
votes
0
replies
397
views
Job: PhD-position in bioinformatics / computational biology
Mergeomics Epigenome Evolution NGS Aging
5 months ago arne.sahm • 0
0
votes
0
replies
1.7k
views
Job: Associate Scientist - NGS Informatics @ AstraZeneca (Metro Boston, MA)
cancer translation ngs genomics Job
9.5 years ago jhjohnsn • 0
0
votes
0
replies
280
views
Job: PhD-position in bioinformatics / computational biology
Epigenomics NGS Aging Biobase
updated 3 months ago by 42k • written 3 months ago by • 0
0
votes
0
replies
1.1k
views
Job: Bioinformatician ('CHBIO15) (m/f)
bioinformatician job Linux NGS Job
5.8 years ago l.brown ▴ 10
1
vote
0
replies
1.6k
views
News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
workshop ngs training News
10.0 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
1.8k
views
Job: Bioinformatician / NGS Data Analyst (Stark Group, Vienna, Austria)
bioinformatician job ngs genomics Job
9.4 years ago stark • 0
1
vote
0
replies
2.4k
views
Job: Postdoctoral/Senior Scientist Position in New York City- Mount Sinai School of Medicine
genomics data integration job ngs computational biology Job
9.3 years ago supindab ▴ 10
0
votes
0
replies
1.5k
views
Job: Senior Research Associate in Bioinformatics, Norwich Medical School, UEA, UK
bioinformatician job biofilm NGS Job
9.1 years ago Daniel Brewer ▴ 100
1
vote
0
replies
1.7k
views
Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.9 years ago mmartin ▴ 20
0
votes
0
replies
2.1k
views
Job: Bioinformatics Data Analyst in Cancer Immunology
job NGS Data Analyst Cancer Job
8.6 years ago Jaritz,Markus ▴ 20
0
votes
0
replies
1.7k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.6 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
1.5k
views
Job: 2015 Movember Foundation PhD Studentship in Bioinformatics @ UEA, Norwich, UK
Phd NGS cancer prostate Job
8.6 years ago Daniel Brewer ▴ 100
38 results • Page 1 of 1
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Comment: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
Answer: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Comment: AffylmGUI does not start wit R 4.4.1 by Gordon Smyth 51k
Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
Answer: rtracklayer accessing UCSC data table not working by James W. MacDonald 67k
The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …
Answer: For feline genome by James W. MacDonald 67k
This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…
Votes
Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
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