Showing : rna • reset
0
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80
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Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 17 days ago by ▴ 970 • written 17 days ago by • 0
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171
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Cross-cultivar RNA-seq analysis
RNA Normalization
9 months ago nancy • 0
0
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4
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399
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
9 months ago Nirad • 0
0
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3
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426
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 14 months ago by 44k • written 14 months ago by • 0
4
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3
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511
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 15 months ago by 58k • written 15 months ago by ▴ 20
2
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7
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372
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 20 months ago by 58k • written 20 months ago by • 0
1
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1
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208
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How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 21 months ago by 35k • written 21 months ago by • 0
0
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6
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284
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 23 months ago by 35k • written 23 months ago by • 0
0
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0
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342
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
2.5 years ago jmaanaki • 0
1
vote
1
reply
404
views
how to filter genes in significant module?
RNA WGCNA filter
2.6 years ago modarzi ▴ 10
0
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2
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407
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 2.8 years ago by 35k • written 2.8 years ago by ▴ 10
2
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1
reply
308
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DESeq2 statistic and design
deseq2 RNA
updated 2.8 years ago by 35k • written 2.8 years ago by ▴ 10
5
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5
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554
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 2.8 years ago by ★ 27k • written 2.8 years ago by ▴ 20
2
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3
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538
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 2.8 years ago by 13k • written 2.8 years ago by ▴ 20
1
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0
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449
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Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
3.2 years ago l.brown ▴ 10
0
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0
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444
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
4.0 years ago fawazfebin ▴ 30
0
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1
reply
550
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 4.4 years ago by 35k • written 4.4 years ago by ▴ 20
0
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1
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987
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RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 4.5 years ago by 35k • written 4.5 years ago by ▴ 20
1
vote
1
reply
693
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 4.7 years ago by ▴ 390 • written 4.7 years ago by ▴ 30
5
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4
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774
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 4.7 years ago by • 0 • written 4.7 years ago by ▴ 30
3
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6
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1.2k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 4.8 years ago by 58k • written 4.8 years ago by ▴ 20
6
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5
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2.2k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 4.8 years ago by 44k • written 4.8 years ago by ▴ 20
0
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0
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836
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
4.9 years ago • updated 4.8 years ago Walter F. Baumann ▴ 10
3
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1
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1.0k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 5.4 years ago by ★ 27k • written 5.4 years ago by • 0
0
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4
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4.0k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 5.9 years ago by 35k • written 5.9 years ago by • 0
0
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2
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728
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Normalizzation indipentent data from RNAAeq experiment
rna normalization
7.3 years ago aristotele_m ▴ 30
26 results • Page 1 of 1
Recent ...
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Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by tjhwangxiong • 0
``` https://drive.google.com/drive/folders/1787thVatZpt_KFrfXY-aXV1m0FRm8Mhm?usp=sharing ``` Thanks for your reply. I have uploaded the fil…
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
No I can’t help with exercises. Just to be clear I’m not affiliated with Harvard and have no supported effort in relation to the edx classe…
Answer: Problems to find the pvalues via rowttests by Gordon Smyth 44k
Ordinary t-tests aren't recommended for genomic analyses because they have poor power and higher false discovery rates. Using the limma p…
Answer: How to insert a qvalues column in a dataframe with pvalues in R by Gordon Smyth 44k
Here and in a previous post, it seems you're not using recommended Bioconductor workflows for Affymetrix microarrays. If you used a standar…
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
Thank you. I hope I can still let you know if I have issues with your exercises. They are very challenging but useful! :)
Votes
Annotating GRanges with TxDb gene models using plyranges
plyranges select() when a metadata column is shared with core variable
A: How do I merge a list of GRanges?
Comment: Need help for ProStaR Stand-alone install
Emirical Bayesian shrinkage for dispertion/LFC estimation
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