Showing : rna • reset
2
votes
1
reply
82
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 14 days ago by 45k • written 14 days ago by • 0
1
vote
2
replies
172
views
Is it necessary to standardize Combat in R?
RNA Combat sva R
5 weeks ago • updated 4 weeks ago takemoto • 0
1
vote
1
reply
151
views
Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 3 months ago by ▴ 70 • written 3 months ago by ▴ 10
0
votes
1
reply
204
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 5 months ago by ★ 1.3k • written 5 months ago by • 0
0
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0
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218
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Cross-cultivar RNA-seq analysis
RNA Normalization
14 months ago nancy • 0
0
votes
4
replies
500
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
14 months ago Nirad • 0
0
votes
3
replies
594
views
Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 19 months ago by 45k • written 19 months ago by • 0
4
votes
3
replies
666
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 20 months ago by 60k • written 20 months ago by ▴ 20
2
votes
7
replies
479
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 2.1 years ago by 60k • written 2.1 years ago by • 0
1
vote
1
reply
266
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 2.2 years ago by 37k • written 2.2 years ago by • 0
0
votes
6
replies
394
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 2.3 years ago by 37k • written 2.3 years ago by • 0
0
votes
0
replies
399
views
Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
3.0 years ago jmaanaki • 0
1
vote
1
reply
501
views
how to filter genes in significant module?
RNA WGCNA filter
3.0 years ago modarzi ▴ 10
0
votes
2
replies
459
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 3.2 years ago by 37k • written 3.2 years ago by ▴ 10
2
votes
1
reply
352
views
DESeq2 statistic and design
deseq2 RNA
updated 3.2 years ago by 37k • written 3.2 years ago by ▴ 10
5
votes
5
replies
641
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 3.3 years ago by ★ 27k • written 3.3 years ago by ▴ 20
2
votes
3
replies
603
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 20
1
vote
0
replies
500
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
3.7 years ago l.brown ▴ 10
0
votes
0
replies
486
views
R code for finding wobble/redundant positions in an RNA string
r code rna wobble
4.4 years ago fawazfebin ▴ 30
0
votes
1
reply
581
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 4.9 years ago by 37k • written 4.9 years ago by ▴ 20
0
votes
1
reply
1.0k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 4.9 years ago by 37k • written 4.9 years ago by ▴ 20
1
vote
1
reply
746
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 5.1 years ago by ▴ 400 • written 5.1 years ago by ▴ 30
5
votes
4
replies
826
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 5.1 years ago by • 0 • written 5.1 years ago by ▴ 30
3
votes
6
replies
1.2k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 5.2 years ago by 60k • written 5.2 years ago by ▴ 20
6
votes
5
replies
2.5k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 20
0
votes
0
replies
898
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
5.3 years ago Walter F. Baumann ▴ 10
3
votes
1
reply
1.1k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 5.8 years ago by ★ 27k • written 5.8 years ago by • 0
0
votes
4
replies
4.2k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 6.3 years ago by 37k • written 6.3 years ago by • 0
0
votes
2
replies
874
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
7.7 years ago aristotele_m ▴ 30
29 results • Page 1 of 1
Recent ...
Replies
Comment: FeaturePlot in scater by Guandong Shang ▴ 20
Thanks, this is what I want!
Comment: Using Age or other numerical variable to model expression in deseq2 by James W. MacDonald 60k
If you converted to a factor, the intercept is the reference level (you have to look at `levels(age)` to know what the reference is). If yo…
Answer: How fix lines of dendrogram that overlap in the column portion of a heatmap? by James W. MacDonald 60k
You won't be able to 'fix' that without changing the width to something huge, at which time the usefulness will have been reduced quite a b…
Comment: How can i fix this problem in R by ATpoint ★ 1.3k
That means you have a typo. Please copy and paste the command as-is.
Answer: FeaturePlot in scater by alan.ocallaghan ▴ 100
Something like this? ``` r library("scater") example_sce <- mockSCE() example_sce <- logNormCounts(example_sce) example_sce <- r…
Votes
Answer: FeaturePlot in scater
Answer: FeaturePlot in scater
A: Retrieve canonical transcript for each gene via ensembldb R package
Answer: How to use combat in order to remove batch effects?
Answer: How to use combat in order to remove batch effects?
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