Showing : rtracklayer • reset
0
votes
18
replies
2.5k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.2 years ago by • 0
1
vote
2
replies
253
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
8 weeks ago thomas • 0
0
votes
4
replies
342
views
Installation problem of rtracklayer on Bioconductor version 3.19
newpackage rtracklayer
updated 10 weeks ago by 3.9k • written 10 weeks ago by • 0
9
votes
38
replies
6.8k
views
manipulate bedpe format files
GRanges bedpe structural variants rtracklayer
written 8.2 years ago by ▴ 190
2
votes
7
replies
507
views
distanceToNearest
rtracklayer ranges distanceToNearest
3 months ago robjohn70000 • 0
1
vote
3
replies
598
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 6 months ago by 16k • written 6 months ago by ▴ 10
1
vote
0
replies
437
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
6 months ago yujin ▴ 10
1
vote
1
reply
473
views
rtracklayer error for browserSession UCSC
rtracklayer
updated 6 months ago by 16k • written 6 months ago by ▴ 10
0
votes
0
replies
713
views
Problem with loading rtracklayer
rtracklayer
updated 14 months ago by 3.9k • written 14 months ago by • 0
0
votes
0
replies
496
views
rtracklayer ignores ranges argument
rtracklayer
15 months ago Kyle • 0
2
votes
3
replies
1.7k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 15 months ago by • 0 • written 17 months ago by ▴ 10
0
votes
0
replies
594
views
Error importing UCSC phastCons annotation in BigWig format
GenomicRanges rtracklayer
15 months ago Delta._.43 ▴ 20
0
votes
1
reply
919
views
rtracklayer import bigwig error
rtracklayer
updated 15 months ago by ▴ 20 • written 4.8 years ago by ▴ 100
4
votes
5
replies
5.5k
views
Convert an R data.frame to a bed file in R
rtracklayer R bed
updated 15 months ago by • 0 • written 21 months ago by ▴ 50
3
votes
4
replies
1.2k
views
Convert a bed file to bigBed with rtracklayer
bed bigBed rtracklayer ucsc
17 months ago L ▴ 50
0
votes
8
replies
1.8k
views
rtracklayer bigWig import fails with "'ranges' must have the length of the object to construct"
rtracklayer
updated 18 months ago by • 0 • written 21 months ago by • 0
1
vote
3
replies
874
views
rtacklayer::import.bed silently adds 1 to the start coordinates
rtracklayer
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 30
2
votes
2
replies
766
views
[BigWigFile] import as RLE vs default and length comparaison
BSgenome.Hsapiens.UCSC.hg19 rtracklayer AnnotationHub
20 months ago Lenny186 • 0
0
votes
1
reply
583
views
rtracklayer import only subset of ranges
rtracklayer
updated 20 months ago by 3.9k • written 20 months ago by ▴ 90
0
votes
1
reply
962
views
Can´t install GenomicRanges and rtracklayer
rtracklayer GenomicRanges Installation
updated 22 months ago by 65k • written 22 months ago by • 0
2
votes
4
replies
6.0k
views
rtracklayer export GRangesList as gtf and change attributes
grangeslist rtracklayer
updated 22 months ago by • 0 • written 8.8 years ago by ▴ 90
1
vote
2
replies
1.5k
views
Extracting Score/Coverage From GRange Object
IRanges rtracklayer GenomicRanges
2.0 years ago vanbelj ▴ 30
0
votes
1
reply
695
views
Rtracklayer
rtracklayer RNASeq gff
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
5
votes
5
replies
3.2k
views
Issues with installation status of R package rtracklayer
rtracklayer Bioconductor
updated 2.2 years ago by 3.9k • written 3.3 years ago by ▴ 830
1
vote
4
replies
1.1k
views
seqinfo got changed after `library(rtracklayer)`
rtracklayer GenomeInfoDb
2.4 years ago Ge Tan ▴ 20
0
votes
2
replies
1.9k
views
R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw rtracklayer Windows http
2.4 years ago sla • 0
0
votes
4
replies
1.4k
views
rtracklayer can't access hg38 on UCSC?
rtracklayer Visualization
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
2
votes
4
replies
1.1k
views
default behaviour of import.bw
import.bw rtracklayer
2.5 years ago Yixin • 0
0
votes
0
replies
553
views
Bug in rtracklayer
rtracklayer
2.5 years ago You • 0
2
votes
6
replies
2.0k
views
rtracklayer: error in importing bigwig file in r in windows
rtracklayer bigwig file
updated 2.6 years ago by ★ 1.0k • written 4.2 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter GenomicRanges rtracklayer GRanges
2.7 years ago • updated 2.6 years ago Arslan • 0
0
votes
0
replies
619
views
rtracklayer v 1.53.1 refuses to load xz-compressed files.
rtracklayer
2.7 years ago Charles • 0
2
votes
3
replies
1.7k
views
Importing a bed file
rtracklayer
2.9 years ago Skylar • 0
0
votes
1
reply
1.1k
views
Bug in rtracklayer liftOver function
rtracklayer
updated 3.0 years ago by 65k • written 3.0 years ago by • 0
2
votes
3
replies
1.6k
views
liftOver bug, reproducible
liftOver rtracklayer
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 30
9
votes
9
replies
5.4k
views
Importing a BED file with floating point scores?
rtracklayer bed
updated 3.2 years ago by ▴ 120 • written 8.1 years ago by ★ 7.9k
1
vote
4
replies
2.4k
views
Import Chain - Cannot Import Chain File
rtracklayer
updated 3.4 years ago by ▴ 20 • written 5.7 years ago by • 0
1
vote
5
replies
4.0k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 3.4 years ago by ★ 11k • written 3.4 years ago by • 0
2
votes
0
replies
967
views
How to liftOver Paired BED (bedpe) data
rtracklayer
3.4 years ago Mikhail Dozmorov ▴ 30
0
votes
0
replies
726
views
Can you compute summary stats of coverage directly when importing using rtracklayer?
Coverage rtracklayer
3.5 years ago David • 0
2
votes
2
replies
1.2k
views
How to access metadata of GAlignments objects
rtracklayer Rsamtools GAlignments GRanges metadata
updated 4.0 years ago by 16k • written 4.0 years ago by ▴ 10
1
vote
1
reply
2.2k
views
Rtracklayer exporting Granges object as bigwig error: Features cannot overlap
rtracklayer genomicranges granges
updated 4.1 years ago by ★ 11k • written 4.1 years ago by ▴ 20
7
votes
13
replies
2.6k
views
How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer
updated 4.1 years ago by ★ 3.3k • written 4.1 years ago by ▴ 110
0
votes
1
reply
776
views
getting snp and restriction Enzyme site from ucsc genome browswer
rtracklayer
updated 4.2 years ago by ★ 11k • written 4.2 years ago by • 0
1
vote
1
reply
639
views
Rtracklayer fails to export TxDb as GFF3 without CDS
rtracklayer
updated 4.2 years ago by ★ 11k • written 4.2 years ago by • 0
0
votes
0
replies
1.1k
views
Rsamtools / rtracklayer creating csi index for BAM files
rsamtools rtracklayer
4.4 years ago ATpoint ★ 4.1k
1
vote
2
replies
842
views
rtracklayer::export empty score
rtracklayer
updated 4.4 years ago by ★ 11k • written 4.4 years ago by • 0
0
votes
4
replies
1.6k
views
IRanges: solving row 5: range cannot be determined from the supplied arguments (too many NAs)
IRanges rtracklayer
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 30
0
votes
0
replies
734
views
DMDeepm6A: solve_user_SEW0", start, end, width, PACKAGE = "IRanges
rtracklayer IRanges DMDeepm6A
4.5 years ago jovel_juan ▴ 30
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 4.8 years ago by ★ 13k • written 4.8 years ago by ▴ 30
50 results • Page 1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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