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shepherl
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18
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0
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7
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617
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8 weeks ago • updated 2 days ago
shepherl
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6
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3.1k
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updated 24 days ago by
Gordon Smyth
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Arvid Sondén
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40
2
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8
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498
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Gordon Smyth
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Amit
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0
7
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36
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5.5k
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Shiva
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3.9k
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1.3k
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170
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10
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6
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316
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Faisal
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0
4
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8
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351
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740
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written 15 days ago by
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0
9
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12
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7.8k
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6
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16
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2.3k
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updated 2 days ago by
Michael Love
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written 4.6 years ago by
hsbio
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10
6
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12
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4.7k
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6 months ago • updated 3 days ago
shepherl
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3
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70
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4
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158
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0
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4
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230
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2
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3.1k
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11
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5
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7.3k
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3
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3
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292
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6
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461
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Lucy
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60
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6
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308
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updated 15 days ago by
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170
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12
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12
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781
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3
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3
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13k
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5
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1.6k
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0
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2
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1.0k
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updated 28 days ago by
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0
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0
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2.5k
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0
6
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10
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2.2k
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updated 12 days ago by
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0
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written 8.0 years ago by
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170
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3
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103
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30
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2
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214
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28 days ago • updated 23 days ago
w.cookson
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0
0
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4
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155
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0
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4
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202
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15 days ago • updated 14 days ago
Tim Barry
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2
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2
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143
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James W. MacDonald
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written 7 days ago by
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1
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10
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407
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1
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3
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326
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updated 11 days ago by
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written 16 days ago by
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3
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1
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215
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updated 2 days ago by
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i.sudbery
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40
2
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5
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1.1k
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0
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1
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217
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170
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written 22 days ago by
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120
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77
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730
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860
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99
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written 8 days ago by
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5
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228
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updated 1 day ago by
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written 4 days ago by
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0
6
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10
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1.6k
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updated 7 days ago by
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0
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written 14 months ago by
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2
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397
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122
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3
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2
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164
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updated 4 days ago by
Guido Hooiveld
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written 6 days ago by
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10
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3
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176
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updated 9 days ago by
Michael Love
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written 10 days ago by
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20
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6
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407
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updated 22 days ago by
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RL
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0
0
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7
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254
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9 days ago • updated 3 days ago
hortense96
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0
0
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2
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328
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0
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1
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683
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updated 13 days ago by
President Gamer
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0
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written 10 months ago by
abhisek001
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5
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9
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1.2k
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updated 8 days ago by
Gordon Smyth
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written 7 months ago by
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Replies
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
•
0
Thank you for your comment!
I'll review my code from top to bottom.
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