Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
10
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
1 hour ago
Ken C
• 0
0
votes
0
replies
15
views
Minor alleles giving NA from R biomart getBM?
biomaRt
minoralleledata
grch38
getBM
2 hours ago
Jeremy.Clark
• 0
0
votes
2
replies
82
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
19 hours ago • updated 16 hours ago
makala
• 0
2
votes
2
replies
270
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
5 days ago • updated 18 hours ago
Matthew Thornton
▴ 360
0
votes
0
replies
33
views
determine k during RUVSeq
RUVSeq
RUVnormalize
21 hours ago
Ειρήνη
• 0
2
votes
3
replies
81
views
Problem installing ChAMP on a MacBook
ChAMP
updated 23 hours ago by
shepherl
3.9k • written 1 day ago by
Galia
• 0
0
votes
0
replies
31
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
23 hours ago
Shaimaa Gamal
• 0
0
votes
0
replies
12
views
Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
23 hours ago
oliverelijhan
0
0
votes
0
replies
50
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
1 day ago
Anton01
• 0
0
votes
0
replies
28
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
1 day ago
danalvoronov
▴ 10
0
votes
0
replies
28
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
1 day ago
k200987
• 0
2
votes
5
replies
171
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
1 day ago • updated 2 hours ago
Patadù
▴ 10
0
votes
4
replies
109
views
error running enricher from clusterprofiler
clusterProfiler
cluster
1 day ago
Yael
• 0
2
votes
3
replies
104
views
How to correctly adjust for gender in edgeR
design
glm
edgeR
updated 1 day ago by
Gordon Smyth
50k • written 1 day ago by
Guillermo
• 0
2
votes
1
reply
57
views
How to design DEXSeq formula for multiple variables
DEXSeq
updated 1 day ago by
Alejandro Reyes
★ 1.9k • written 3 days ago by
Sara
• 0
4
votes
9
replies
215
views
Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2
timecoursedata
GeneExpression
updated 22 hours ago by
ATpoint
★ 4.1k • written 2 days ago by
pangtaihin
• 0
0
votes
0
replies
27
views
Difference in Contrast in DiffBind
DiffBind
2 days ago
zzrammal
• 0
1
vote
2
replies
75
views
Erroe when using makeOrgPackageFromNCBI()
AnnotationForge
2 days ago • updated 1 day ago
Patadù
▴ 10
10
votes
10
replies
1.9k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 1 day ago by
Leonard Goldstein
▴ 220 • written 6.7 years ago by
Sylvain Foisy
▴ 80
0
votes
3
replies
89
views
Assymetric MA plot with no overall trend
DESeq2
DifferentialExpression
updated 1 day ago by
Michael Love
42k • written 2 days ago by
Kasper
• 0
0
votes
2
replies
109
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
updated 2 days ago by
zhouwanding
▴ 10 • written 4 days ago by
Seungmin
• 0
1
vote
0
replies
316
views
News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 2 days ago
shepherl
3.9k
1
vote
2
replies
107
views
Can log2cpm be used for proteomics data normalization?
metaMSdata
2 days ago • updated 1 day ago
Daniel
• 0
0
votes
1
reply
75
views
normalization across different species for DESeq2 analysis
DESeq2
normalization
Normalization
acrossspecies
updated 2 days ago by
Michael Love
42k • written 3 days ago by
piemmea
• 0
0
votes
1
reply
54
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA
starBase
ceRNA
WebAPI
ENCORI
2 days ago • updated 1 day ago
Bhavya
• 0
1
vote
0
replies
46
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
3 days ago
Aleena
▴ 30
0
votes
0
replies
43
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
3 days ago
Researcher
• 0
0
votes
8
replies
465
views
Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2
pcaExplorer
updated 2 days ago by
BioinfGuru
▴ 30 • written 3 days ago by
Eric Katagirya
• 0
1
vote
3
replies
218
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 2 days ago by
Gordon Smyth
50k • written 3 days ago by
Ashley
• 0
3
votes
4
replies
265
views
Store output of matchPWM()
biostrings
Biostrings
15 days ago • updated 3 days ago
mat149
▴ 70
1
vote
2
replies
203
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
3 days ago • updated 16 hours ago
BioinfGuru
▴ 30
0
votes
2
replies
79
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
3 days ago • updated 2 days ago
Yveto
• 0
0
votes
1
reply
106
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 4 days ago by
Guido Hooiveld
★ 4.0k • written 4 days ago by
aogunbaw
• 0
0
votes
3
replies
141
views
ChAMP installation issue
Cha
ChAMP
4 days ago • updated 3 days ago
e1271094
• 0
0
votes
3
replies
8.5k
views
SingleR Label.Ont
SingleR
updated 5 days ago by
Denis
• 0 • written 8 months ago by
saeed.khalili
• 0
0
votes
1
reply
154
views
Differential gene expression analysis results
DESeq2
DifferentialExpression
updated 7 days ago by
ATpoint
★ 4.1k • written 7 days ago by
sajadahmad41454
• 0
1
vote
2
replies
250
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq
duplicateCorrelation
limma
voom
8 days ago • updated 7 days ago
Dylan.Sheerin
• 0
0
votes
0
replies
65
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
7 days ago
neilzhao
▴ 30
0
votes
1
reply
96
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 8 days ago by
ATpoint
★ 4.1k • written 8 days ago by
sajadahmad41454
• 0
3
votes
4
replies
503
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 8 days ago by
Mike Smith
★ 6.5k • written 11 days ago by
robersy
• 0
2
votes
7
replies
356
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
9 days ago • updated 6 days ago
sajadahmad41454
• 0
0
votes
0
replies
66
views
Treeio as.treedata function seq lenght error
treeio
9 days ago
nromerov
• 0
2
votes
2
replies
265
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
9 days ago • updated 4 days ago
zzrammal
• 0
3
votes
10
replies
436
views
Extremely small p-values using Limma for proteomic data
Proteomics
limma
updated 6 days ago by
James W. MacDonald
65k • written 9 days ago by
Abbey
• 0
2
votes
1
reply
159
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 9 days ago by
James W. MacDonald
65k • written 10 days ago by
e1271094
• 0
0
votes
1
reply
101
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 9 days ago by
shepherl
3.9k • written 10 days ago by
cyril.dalmasso
• 0
0
votes
0
replies
83
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
10 days ago
Dinesh
• 0
3
votes
5
replies
283
views
Help with running egsea()
EGSEA
10 days ago • updated 9 days ago
Chris
▴ 10
3
votes
1
reply
144
views
How to save the DEXSeq results
DEXSeq
updated 10 days ago by
Michael Love
42k • written 10 days ago by
Sara
• 0
4
votes
5
replies
312
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
11 days ago • updated 1 day ago
Chris
▴ 10
193 results • Page
1 of 4
Recent ...
Replies
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Ken C
• 0
Popular Question
to
Johannes Rainer
★ 2.0k
Popular Question
to
Chris
▴ 10
Popular Question
to
Guido Hooiveld
★ 4.0k
Scholar
to
Michael Love
42k
Locations
• All
Greece,
4 minutes ago
Spain,
17 minutes ago
Spain,
20 minutes ago
Sweden,
30 minutes ago
Greece,
34 minutes ago
Traffic: 745 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6