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1
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250
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How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
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updated 12 days ago by 65k • written 12 days ago by • 0
3
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4
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245
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Help with error using camera() in limma
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12 days ago Chris • 0
1
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1
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139
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Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 12 days ago by 42k • written 12 days ago by • 0
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2
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148
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Timecourse RNASeq analysis
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12 days ago • updated 9 days ago Aurora • 0
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123
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Padj "NA" with thousands of low count although the raw read counts are quite large
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updated 12 days ago by 42k • written 13 days ago by • 0
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News: BioC2024 deadlines approaching
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111
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Version 3.15 S4Vectors packages are missing
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updated 12 days ago by 3.9k • written 12 days ago by • 0
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125
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putting my own expression data in deseq2
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updated 12 days ago by ★ 4.1k • written 12 days ago by • 0
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2
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216
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Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
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13 days ago Chris • 0
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3
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Assist me in determining whether the analysis process using the limma package has been executed correctly.
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updated 12 days ago by 65k • written 13 days ago by • 0
0
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0
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Could we detect difference at pathway level but not significant different at gene level?
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13 days ago Chris • 0
3
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3
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253
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DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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updated 13 days ago by ★ 4.1k • written 13 days ago by ▴ 10
1
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1
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141
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Dominance Index for Shotgun Metagenomics Data
microbiome
updated 15 days ago by ▴ 40 • written 16 days ago by ★ 1.5k
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2
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218
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PCA plot suggestions
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updated 16 days ago by 42k • written 17 days ago by • 0
1
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3
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238
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Deseq2. decontXcounts not integers. Useful alternative?
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updated 16 days ago by 42k • written 17 days ago by • 0
0
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1
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153
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ATACseq merge peaks
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updated 16 days ago by ★ 4.1k • written 18 days ago by • 0
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2
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Improving the design matrices vignette in RNAseq123
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Math expression in shapeCustom legend in EnhancedVolcano
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17 days ago • updated 16 days ago pl23 • 0
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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updated 17 days ago by 65k • written 17 days ago by • 0
0
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0
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132
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One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
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17 days ago • updated 9 days ago glaciya2018 • 0
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2
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Reproducibility issue with scran together with lapply and BiocParallel
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18 days ago • updated 17 days ago ATpoint ★ 4.1k
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DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
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updated 18 days ago by 42k • written 18 days ago by • 0
0
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how to do Differential splicing from SGSeq analysis
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18 days ago • updated 13 days ago Sara • 0
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get BM error
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updated 18 days ago by 65k • written 18 days ago by • 0
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How to retrieve gene ontology GO class from gene list?
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updated 17 days ago by 65k • written 19 days ago by • 0
0
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18 days ago Dario Strbenac ★ 1.5k
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3
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updated 18 days ago by 42k • written 18 days ago by ▴ 20
1
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4
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345
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Opposite sign of LFC in count plots of DEGs (DESeq2)
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18 days ago • updated 16 days ago winwater0928 • 0
3
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319
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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
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updated 18 days ago by 42k • written 19 days ago by ▴ 40
1
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1
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184
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Citation for edgeR user guide
edgeR
updated 19 days ago by 50k • written 19 days ago by ▴ 30
0
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730
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News: List of Deprecated Packages for Bioc3.19
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10 weeks ago • updated 19 days ago shepherl 3.9k
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123
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Cannabis OrgDb
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updated 19 days ago by 65k • written 19 days ago by ▴ 10
0
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8
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363
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updated 17 days ago by ★ 1.4k • written 19 days ago by • 0
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19 days ago info ▴ 10
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minfi::read.metharray.exp
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updated 18 days ago by ▴ 780 • written 20 days ago by • 0
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259
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
19 days ago • updated 17 days ago shuwangxinze1996 • 0
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2
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DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
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updated 19 days ago by ▴ 180 • written 14 months ago by ▴ 10
0
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2
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175
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limma-voom: Calculate the log-fold change in gene expression within a sample
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written 19 days ago by • 0
3
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235
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updated 19 days ago by 42k • written 20 days ago by • 0
1
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4
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254
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Error EPICv2 ChAMP
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updated 20 days ago by 65k • written 24 days ago by • 0
0
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1
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131
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FDR via q-value
qvalue
updated 20 days ago by 65k • written 23 days ago by • 0
0
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5
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310
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OrgDb AnnotationForge
updated 18 days ago by 65k • written 21 days ago by • 0
0
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2
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223
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RNAseq:Technical replicates from different batches
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23 days ago • updated 20 days ago catv • 0
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updated 20 days ago by • 0 • written 18 months ago by ▴ 70
6
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12
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
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6 months ago • updated 20 days ago shepherl 3.9k
2
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13
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452
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Trying to use enrichGO
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21 days ago • updated 18 days ago fernanda.backsouza ▴ 10
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0
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Unlocking Potential: NURS FPX Strategies and Insights
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21 days ago vaxahey107 • 0
14
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17
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Why p value inconsistent when using different number of pathway score?
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22 days ago • updated 11 days ago Chris • 0
0
votes
0
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102
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I am trying to detect alternative splicing.
ASpli
22 days ago Sebashish • 0
3
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2
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220
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Cannabis and KEGGgraph
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updated 20 days ago by ★ 3.9k • written 23 days ago by ▴ 10
188 results • Page 2 of 4
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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont by Denis • 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
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thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
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Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
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did you find a solution? I´m having the same problem
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