Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
8
replies
3.7k
views
TCL/TK in R
TCL/TK
4.3 years ago • updated 4.2 years ago
Bogdan
▴ 670
1
vote
0
replies
2.2k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler
KEGG
GeneSetEnrichment
4.2 years ago
makrez
▴ 10
3
votes
3
replies
2.7k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater
SingleCellExperiment
BiocParallel
scuttle
scran
4.2 years ago
enricoferrero
▴ 680
0
votes
0
replies
903
views
Y axis Data Track GVIZ
GVIZ
4.2 years ago • updated 4.1 years ago
rbenel
▴ 50
0
votes
2
replies
1.9k
views
Handling missing seqlenghts
GenomicRanges
4.2 years ago
Charles Plessy
▴ 180
0
votes
1
reply
1.3k
views
Mapping RNA-seq reads - subjunc and align functions
Rsubread
updated 4.2 years ago by
Wei Shi
★ 3.6k • written 4.3 years ago by
sha-ked
• 0
0
votes
0
replies
957
views
Made a pDATA manually for HTqPCR procedure
HTqPCR
phenoData
esetVis
pData
4.3 years ago
Marcelo Laia
▴ 450
1
vote
3
replies
2.1k
views
How delete the AnnotationHub downloaded datasets
AnnotationHub
updated 4.3 years ago by
Mike Smith
★ 6.6k • written 4.3 years ago by
sabermohammdi.1994
• 0
0
votes
1
reply
1.0k
views
Meta analysis
DEGseq
Metanalysis
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
biomyscience
• 0
1
vote
3
replies
2.6k
views
Error arrayQualityMetrics
arrayQualityMetrics
updated 4.3 years ago by
Mike Smith
★ 6.6k • written 4.3 years ago by
Sara
• 0
0
votes
2
replies
1.6k
views
getPromoters
ChIPseeker
4.3 years ago
guoyou88
• 0
0
votes
2
replies
1.6k
views
News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
modeling
statistics
ascona
Workshop
4.3 years ago • updated 3.0 years ago
Wolfgang Huber
★ 13k
1
vote
3
replies
1.5k
views
Help with the beadarray package
IlluminaChip
beadarray
updated 4.3 years ago by
Gordon Smyth
53k • written 4.3 years ago by
noa.gilat
• 0
1
vote
1
reply
1.0k
views
DESEQ2 when global gene expression changes exist
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
Ron
• 0
2
votes
3
replies
1.9k
views
scater::plotHeatmap with swap_rownames gives error
scater
4.3 years ago
enricoferrero
▴ 680
0
votes
2
replies
1.7k
views
DESeq2 PlotCounts() function
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
Nayrouz
• 0
0
votes
1
reply
1.8k
views
Creating custom annotation for running ChIPQC and ChIPseeker
customAnnotation
updated 4.0 years ago by
Gopal
• 0 • written 4.3 years ago by
coldi11
• 0
0
votes
0
replies
960
views
Profiling bioconductor packages in a straightforward fashion
HPC
profiling
performance
4.3 years ago
Jack
• 0
0
votes
0
replies
1.0k
views
WGCNA Consensus Module Sign Question
wgcna
4.3 years ago
erik.burchard
• 0
0
votes
3
replies
1.7k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 4.3 years ago by
swbarnes2
★ 1.4k • written 4.3 years ago by
OST
• 0
2
votes
10
replies
3.7k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 4.3 years ago by
Guido Hooiveld
★ 4.1k • written 4.3 years ago by
Javan Okendo
• 0
2
votes
4
replies
4.5k
views
Is it valid to do gene comparisons on VST or rlog transformed data?
VST
rlog
updated 4.0 years ago by
Sam
• 0 • written 4.3 years ago by
JB
▴ 10
0
votes
7
replies
7.0k
views
how to create an OrgDb package?
orgDb
annotationForge
updated 3.8 years ago by
pengxinyang12
• 0 • written 4.3 years ago by
Haibo Liu
▴ 20
2
votes
1
reply
3.0k
views
relationship between bioconda and bioconductor
Bioconductor
updated 4.3 years ago by
James W. MacDonald
68k • written 4.3 years ago by
Alexandre
▴ 10
0
votes
2
replies
7.9k
views
Interpretation of Log 2 fold change
DESeq2
4.3 years ago
adeler001
• 0
8
votes
8
replies
3.9k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error
msa
updated 4.3 years ago by
UBod
▴ 300 • written 5.5 years ago by
Freddie
▴ 40
1
vote
3
replies
1.5k
views
useEnsemblGenomes not found
biomaRt
4.3 years ago
lessismore
▴ 20
0
votes
6
replies
2.7k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
4.3 years ago • updated 4.2 years ago
Richard
• 0
0
votes
2
replies
2.2k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install
Bioconductor
DESeq2
4.3 years ago
ladypurrsia
▴ 10
0
votes
2
replies
3.3k
views
DESeq2 version
DESeq2
4.3 years ago
adeler001
• 0
2
votes
3
replies
2.2k
views
Contrast treated samples against both scramble and untreated controls
design
contrast
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
oliver.ziff
• 0
0
votes
4
replies
1.3k
views
How to analyze 10 samples (5 control, 5 treatment) which perform the experiment from different day
DESeq2
RNASeq
4.3 years ago
Yosapol
• 0
1
vote
6
replies
2.3k
views
DESeq2 Normalization
DESeq2
4.3 years ago
Jamie
• 0
0
votes
2
replies
1.3k
views
DESeq function stuck on estimating gene-wise dispersion.
DESeq2
4.3 years ago
m.deluca
• 0
1
vote
3
replies
2.2k
views
trackViewer peak visualization
trackViewer
4.3 years ago
liruiradiant
• 0
0
votes
2
replies
2.9k
views
trackViewer bigWig smoothing
trackViewer
4.3 years ago
liruiradiant
• 0
0
votes
2
replies
1.6k
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment
Genome
4.3 years ago • updated 4.2 years ago
Charles Plessy
▴ 180
0
votes
2
replies
1.6k
views
trackViewer font
trackViewer
4.3 years ago
liruiradiant
• 0
0
votes
0
replies
1000
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
4.3 years ago
HELEN
• 0
2
votes
2
replies
1.3k
views
My "Ask a Question" post has been flagged as spam - it is not
Bioconductor
updated 4.3 years ago by
Gordon Smyth
53k • written 4.3 years ago by
ladypurrsia
▴ 10
0
votes
0
replies
1.3k
views
Problem with Plots or Graphics Device in the RStudio
NullDevice
plot
R
4.3 years ago
Abdou-samad
• 0
0
votes
1
reply
1.3k
views
JAVA_HOME cannot be determined on Windows on Bioconductor platform report
bioc
Bioconductor
updated 4.3 years ago by
Hervé Pagès
16k • written 4.3 years ago by
cannin
▴ 20
0
votes
1
reply
3.1k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy
R
updated 4.3 years ago by
Mike Smith
★ 6.6k • written 4.3 years ago by
Limin
• 0
0
votes
1
reply
1.4k
views
DEXSeq prepare annotation script throws "object has no attribute 'next'" for Ensemble GTFs
DEXSeq
updated 4.0 years ago by
Alejandro Reyes
★ 1.9k • written 4.3 years ago by
Hahsooni
• 0
0
votes
5
replies
2.6k
views
RNA-seq with patient samples without replicates with multiple timepoints
edgeR
RNASeq
multi
updated 4.3 years ago by
Gordon Smyth
53k • written 4.3 years ago by
kevin
• 0
1
vote
1
reply
888
views
Multiple samples per individual
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
Bine
▴ 50
0
votes
2
replies
2.6k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
Raj
• 0
0
votes
2
replies
1.4k
views
WGCA tutorial related question
WGCNA
4.3 years ago
wes
• 0
4
votes
4
replies
2.5k
views
Model matrix not full rank, then
DESeq2
4.3 years ago
Sonia
• 0
2
votes
2
replies
4.7k
views
Error connecting to external databases through celldex
celldex
4.3 years ago
swbarnes2
★ 1.4k
46,730 results • Page
110 of 935
Recent ...
Replies
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Hugo Gruson
• 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
LillianaVolkman99
• 0
thank you very much. https://www.biostars.org/p/9617271/
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …
Answer: Bile acid analysis with limpa
by
Gordon Smyth
53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards
• All
Popular Question
to
ATpoint
★ 5.0k
Popular Question
to
Martin Morgan
25k
Teacher
to
Michael Love
43k
Popular Question
to
A
• 0
Popular Question
to
Lluís Revilla Sancho
▴ 760
Locations
• All
United States,
just now
United States,
4 minutes ago
USA,
33 minutes ago
United States,
42 minutes ago
Germany,
53 minutes ago
Traffic: 1592 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6