1
vote
1
reply
1.0k
views
DESeq2 - DGE in organoids for multiple group comparisons
personalome organoids DGE DESeq2
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 10
0
votes
1
reply
748
views
Why is the number of DEG different when comparing A versus B and B versus A?
DESeq2
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
0
votes
4
replies
2.9k
views
Tximport error message - colnames
tximport
written 4.6 years ago by • 0
0
votes
2
replies
3.1k
views
CibersortX running error for Single cell-RNA
Singlecell-RNA cibersotrX
4.6 years ago H. Z. Amini ▴ 10
1
vote
2
replies
2.4k
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
4.6 years ago carine.genet • 0
2
votes
8
replies
3.0k
views
DiffBind -- Error: No sites have activity greater than minMaxval
DiffBind
updated 3.3 years ago by • 0 • written 4.6 years ago by ▴ 10
1
vote
2
replies
1.8k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 4.6 years ago by 68k • written 4.6 years ago by • 0
0
votes
1
reply
1.4k
views
Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 4.6 years ago by ▴ 780 • written 4.6 years ago by • 0
2
votes
9
replies
2.4k
views
New annotation package - no response from packages@bioconductor.org
Devel devel
updated 4.6 years ago by ▴ 160 • written 4.6 years ago by ▴ 20
5
votes
5
replies
6.4k
views
BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt connection sql
updated 4.6 years ago by ▴ 80 • written 4.6 years ago by ▴ 10
0
votes
2
replies
1.5k
views
where to download practice data
DESeq2
updated 4.6 years ago by ★ 5.0k • written 4.6 years ago by • 0
0
votes
1
reply
1.4k
views
How to calculate high and low tumor mutational burden
SomaticMutation miRNA
updated 4.6 years ago by ★ 5.0k • written 4.6 years ago by ▴ 20
0
votes
1
reply
1.0k
views
DESeq2: Paired samples (before and after treatment) with different responses
DESeq2
updated 4.6 years ago by ★ 1.4k • written 4.6 years ago by • 0
2
votes
2
replies
927
views
How to remove batch effect from multiple rna-seq dataset before running deseq2
DESeq2
4.6 years ago Yosapol • 0
0
votes
1
reply
1.6k
views
Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design parameter in RangedSummarizedExperiment
SRA DESeq2
4.6 years ago Serge • 0
0
votes
1
reply
1.1k
views
Query regarding WGCNA module formation
WGCNA RNAseq RNASeqData
updated 4.6 years ago by ▴ 760 • written 4.6 years ago by • 0
0
votes
3
replies
1.5k
views
Contrasting LogFCs in DESeq2
DESeq2 RNASeqData
updated 4.6 years ago by ★ 1.4k • written 4.6 years ago by • 0
0
votes
0
replies
1.5k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage ggtree
4.6 years ago moria.robinson • 0
1
vote
1
reply
1.7k
views
[DESeq2] - Making DESeq Dataset object from csv of already normalized counts.
DESeq2
4.6 years ago Michael • 0
3
votes
2
replies
5.8k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 4.6 years ago by 68k • written 4.6 years ago by ★ 1.6k
0
votes
0
replies
1.4k
views
Job: Bioinformatician, Stem Cell Translation Laboratory, National Center for Advancing Translational Sciences (NCATS), NIH
JobPosting
4.6 years ago hannah.baskir • 0
0
votes
2
replies
827
views
DESeq2 - Cannot replicate log2FC calculations
DESeq2
4.6 years ago Sara • 0
0
votes
5
replies
3.4k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 4.6 years ago by ▴ 10 • written 5.9 years ago by • 0
0
votes
1
reply
1.1k
views
biomaRt - rice genes database not working
biomaRt
updated 4.6 years ago by ★ 1.4k • written 4.6 years ago by • 0
0
votes
1
reply
1.3k
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray HDF5Array DelayedArray
4.6 years ago Koki ▴ 10
0
votes
2
replies
1.9k
views
TCGA data Query (GDCquery): external_gene_name " are missing
TCGAbiolinks
4.6 years ago H. Z. Amini ▴ 10
0
votes
2
replies
1.4k
views
BiocCheck object initialization - NOTE
BiocC BiocCheck
4.7 years ago • updated 4.6 years ago ullrich ▴ 20
2
votes
1
reply
1.7k
views
DataFrame or DFrame
S4Vectors
updated 4.6 years ago by 700 • written 4.6 years ago by ★ 1.6k
0
votes
1
reply
1.2k
views
curatedTCGAData: How to get metadata about assays
curatedTCGAData
updated 4.6 years ago by 700 • written 4.6 years ago by • 0
0
votes
2
replies
1.6k
views
recount3: advice for working with an unannotated genes
recount3
updated 4.1 years ago by • 0 • written 4.6 years ago by • 0
5
votes
9
replies
4.5k
views
Error via running GDCquey from TCGAbiolinks package
TCGA Genome Data Common portal
updated 4.6 years ago by ▴ 10 • written 7.5 years ago by ▴ 10
0
votes
0
replies
2.9k
views
TCGA-BRCA downloading issue by GDCquery
TCGAbiolinks TCGAWorkflowData
4.6 years ago H. Z. Amini ▴ 10
4
votes
9
replies
4.9k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 4.6 years ago by ★ 6.6k • written 4.9 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Notification for package release?
packages
updated 4.6 years ago by ▴ 760 • written 4.6 years ago by ▴ 10
9
votes
8
replies
2.4k
views
Processing time of blockApply and DelayedArray
DelayedArray HDF5Array
updated 4.6 years ago by 16k • written 4.6 years ago by ▴ 40
2
votes
2
replies
2.3k
views
DESeq2 time-series with two conditions and several patients
DESeq2
4.6 years ago Karolina Trachtova ▴ 10
0
votes
1
reply
3.0k
views
Doing differential expression using FPKM , samples don't have replication
dge fpkm rna-seq
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
1
vote
1
reply
864
views
Is there any API to get info of pkg in bioconductor like cranchecks?
Bioconductor CRAN
updated 4.6 years ago by ★ 6.6k • written 4.6 years ago by • 0
1
vote
2
replies
2.2k
views
Design Formula, PCA, and Sex Effect
DESeq2
4.6 years ago GHI ▴ 10
5
votes
15
replies
19k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
1
reply
1.3k
views
GEOquery
GEOquery
updated 4.6 years ago by ▴ 780 • written 4.6 years ago by ▴ 10
7
votes
4
replies
20k
views
DESeqDataSetFromMatrix
DESeqDataSetFromMatrix
4.6 years ago Gian ▴ 30
2
votes
3
replies
1.8k
views
Differential expression error in edgeR - maybe from design matrix?
design edgeR matrix RNA-seq MDplot
updated 4.6 years ago by 53k • written 4.6 years ago by • 0
0
votes
0
replies
1.2k
views
News: Nominations for Bioconductor 2021 Awards!
Bioconductor Bioc2021 Recognition Awards
4.6 years ago shepherl 4.3k
0
votes
0
replies
1.3k
views
CHIPseeker- promoter gene names
ChIPseeker CHIPsee
4.6 years ago rb • 0
0
votes
0
replies
994
views
TFutils database
TFutils mouse gene convert
4.6 years ago nicocillari • 0
2
votes
3
replies
2.7k
views
Importing a bed file
rtracklayer
4.6 years ago Skylar • 0
0
votes
0
replies
1.1k
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
4.6 years ago kyleyxw • 0
1
vote
9
replies
3.2k
views
How to filter EnsDb into another EnsDb object instead of GRange?
ens ensembldb EnsDb.Hsapiens.v86 EnsDb.Rnorvegicus.v75
4.6 years ago Ahdee ▴ 60
0
votes
0
replies
897
views
TCSeq input information
time RNAseq TCSeq
4.6 years ago curiousmind007 ▴ 10
46,712 results • Page 123 of 935
Recent ...
Replies
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Locations • All
The city by the bay, 2 minutes ago
Singapore, 3 minutes ago
United States, 5 minutes ago
United States, 7 minutes ago
United Kingdom, 15 minutes ago
Traffic: 982 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6