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1
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2.2k
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Error GO.db Installation
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DESeq2 Experiment Setup
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Installing DESeq2 on R 3.6.2 fails, due to package "foreign" being unavailable
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CAGEfightR quickTSSs(CTSSs) output Error in stop_if_wrong_length("'seqnames'", ans_len)
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5.6 years ago ariel.ogran • 0
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4
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5.6 years ago moldach ▴ 20
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5
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Error with using getBM function in biomaRt
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5.6 years ago morteza.aslanzadeh ▴ 30
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714
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small number of significant gene
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A problem about RNA-seq workflow:9 Time course experiments
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updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 40
3
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6
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Carry over variable features when converting FastMNN SCE object to Seurat object
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updated 5.6 years ago by ★ 29k • written 5.6 years ago by ▴ 40
1
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2
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Cannot Install gmapR Bioconductor Package
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
1
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9
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Use of coef() as a measure of effect size in a multiple regression using DESeq2
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updated 4.4 years ago by ▴ 10 • written 5.6 years ago by • 0
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4
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updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 40
1
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1
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1.2k
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Heng Li's fastq parsing benchmark - attempt in R
biostrings gz
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 90
1
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5
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Invalid result error in biomaRt::getBM with archive Ensembl versions
biomart
updated 5.6 years ago by 68k • written 5.6 years ago by ★ 7.9k
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3
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965
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TFBSTools promoter analysis
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5.6 years ago 19807877 • 0
3
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8
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Normalisation in DESeq2
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
1
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3
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DeSeq2 error: counts matrix should be numeric, currently it has mode: character
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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0
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1.0k
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"Frozen" RUVseq normalization
RUVseq machine learning
5.6 years ago acquaviva.massimo • 0
1
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8
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3.2k
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extract CpGs from DMRcate results
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updated 5.6 years ago by ▴ 230 • written 5.6 years ago by ▴ 40
0
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1
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445
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Bogdan Popescu, PhD
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5.6 years ago tableta.ntrig • 0
1
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3
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2.7k
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Pairwise comparison of multiple groups with different base
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updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 10
0
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4
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2.7k
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How can I generate a heatmap and clustering of differentially expressed genes in a RNA-seq data?
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updated 11 months ago by • 0 • written 5.6 years ago by • 0
0
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1
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1.9k
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makeTxDbFromGFF warning meaning
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updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 100
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0
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News: Public Calendar of Events
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5.6 years ago shepherl 4.2k
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3
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DiffBind: reverse absolute fold change in dba.report ie. abs(rep$Fold)
diffbind atac
updated 5.6 years ago by ★ 5.2k • written 5.6 years ago by • 0
1
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8
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[Outlier Gene removal] - One sample with outlier counts for some genes
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
3
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6
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How to manage AnnotationHub snapshots / most OrgDB are missing?
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updated 3.5 years ago by 4.2k • written 5.6 years ago by ★ 2.0k
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Error in generating heatmap
dep
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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2
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Conducting differential variability analysis with DESeq2
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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5
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GenomicInteractions duplicate annotations
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5.6 years ago dogancan • 0
4
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6
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linear mixed models using edgeR+limma
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updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 10
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How to access metadata of GAlignments objects
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updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 10
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How to make PCA plot using DESeq2 for a group design
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
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10
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how to analyze WGCNA results?
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
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7
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edgeR + tximport: calcNormFactors and the usage of offsets
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updated 12 months ago by 53k • written 5.7 years ago by ▴ 20
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ATACSeqQC - error when splitting files using mm10
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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DESeq2 LRT test for multi-factor designs
deseq2
updated 3.8 years ago by 43k • written 5.6 years ago by • 0
3
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6
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Better way to find head to head GRanges?
promoter
updated 5.6 years ago by 16k • written 5.7 years ago by ▴ 180
1
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4
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CAGEr quantilePositions() takes forever to run
CAGEr quantilePositions
5.6 years ago mirkocelii ▴ 40
0
votes
1
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939
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DESeq2 for normalizing metagenomic counts
deseq2
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
0
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1
reply
533
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plot function in flowType under R4.0.0
software error
5.6 years ago lifengt • 0
0
votes
2
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624
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How to find differential gene and expression analysis using DESeq or edgeR
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
0
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2
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669
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about function parameters
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1
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8
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How to change XLOC ID to Gene symbol from Cuffdiff ?
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updated 4.0 years ago by • 0 • written 5.6 years ago by • 0
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4
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Error attaching TIN
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updated 5.6 years ago by 25k • written 5.6 years ago by • 0
1
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1
reply
796
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Meeting Questions when using Deseq2paper package
deseq2
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
46,710 results • Page 165 of 935
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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