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Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
6 weeks ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
6 weeks ago
Maya
0
3
votes
6
replies
1.0k
views
Highly similar RNA-seq samples in PCA - pooling or technical duplication?
RNASeq
DESeq2
DifferentialExpression
RNASeqData
written 8 weeks ago by
Ahmed Salah
• 0
0
votes
1
reply
1.3k
views
two questions about limma
Microarray
limma
Microarray
limma
updated 7 weeks ago by
Gordon Smyth
53k • written 18.9 years ago by
De-Jian ZHAO
▴ 240
0
votes
1
reply
218
views
Question about DESeq2 Design for Paired Treatment Study
DESeq2
updated 7 weeks ago by
ATpoint
★ 5.0k • written 7 weeks ago by
Junmo
• 0
0
votes
1
reply
320
views
News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
written 7 weeks ago by
laurah ondari
• 0
0
votes
1
reply
184
views
PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
written 7 weeks ago by
bolusharris
• 0
0
votes
3
replies
315
views
DECIPHER DesignProbes unable to design FISH-probes
decipher
FISH
DECIPHER
FISH-probe
probe-design
written 7 weeks ago by
vreinmuth
• 0
0
votes
2
replies
1.3k
views
p.adjust BH Question
written 14.4 years ago by
David Young
▴ 10
1
vote
4
replies
470
views
Large logFC but somewhat high FDR
limpa
7 weeks ago • updated 6 weeks ago
JKim
• 0
0
votes
1
reply
300
views
Job:
Bioinformatician at the Lausanne University Hospital
GenomicRanges
JobPosting
written 7 weeks ago by
story.benjamin
▴ 20
3
votes
5
replies
558
views
upstream git branches of bioc-release
Bioconductor
written 7 weeks ago by
Jeroen
▴ 10
0
votes
2
replies
240
views
limpa - drivers for unusually high standard error?
limpa
updated 7 weeks ago by
Gordon Smyth
53k • written 7 weeks ago by
Julia Broadbent
• 0
1
vote
4
replies
2.0k
views
How can I correctly use phyloseq with Docker?
phylo
phyloseq
Docker
updated 5 weeks ago by
fnfgame
• 0 • written 8 months ago by
Franz Bachmann
• 0
0
votes
1
reply
469
views
Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
flowWorkspace
FlowCytometry
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 6 months ago by
Valeria
• 0
0
votes
2
replies
1.2k
views
Install old version of DESeq2
apeglm
Install
DESeq2
version
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 6 months ago by
Asma
• 0
0
votes
1
reply
443
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 6 months ago by
Sabina
• 0
0
votes
2
replies
441
views
ORFik: spliced 5utr regions
splicing
5utr
ORFik
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 6 months ago by
luna.picello
• 0
0
votes
2
replies
608
views
BiocManager::install() doesn't work
Install
Biocond
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
flying_breadman
• 0
0
votes
2
replies
410
views
Results with PON give more variants
mutect2
variants
pon
written 6 months ago by
ramiro.barrantes
▴ 10
0
votes
2
replies
400
views
Empty boxes in treemap plot rrvgo package
rrvgo
written 5 months ago by
Asma
• 0
0
votes
1
reply
332
views
CRISPRSeek Question: changing weight and gRNA.size causes error
CRISPRseek
CRISPR
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Citrus
• 0
0
votes
2
replies
565
views
Feedback needed on new user-friendly BED file tool
bedbaser
offtopic
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
nadia
• 0
0
votes
1
reply
309
views
sigDF object in sesame
sesame
sesameData
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Ramiro
• 0
0
votes
3
replies
431
views
Create consensusMatrix for codon bases
Biostrings
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Hassan
• 0
0
votes
2
replies
501
views
Memory error while running alignments
DECIPHER
Alignment
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Mihir
• 0
1
vote
11
replies
2.1k
views
Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
DESeq2
scRNAseq
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Raya
• 0
0
votes
1
reply
334
views
Finding duplicated entries in GRangesList
GenomicRanges
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 5 months ago by
Marco
• 0
0
votes
2
replies
353
views
DESeq2 on non-RNASeq counts data
DESeq2
written 5 months ago by
vs
• 0
0
votes
2
replies
510
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 6 weeks ago by
MarcHintz99
• 0 • written 4 months ago by
Rui
• 0
0
votes
2
replies
617
views
Problem with the TMB plot
Bioconductor
written 4 months ago by
nayanajose
• 0
0
votes
1
reply
341
views
mzR-Rcpp compiler version issue
Rcpp
Perseus
mzR
updated 8 weeks ago by
Laurent Gatto
1.6k • written 4 months ago by
bniego
• 0
2
votes
3
replies
573
views
DESeq2 design for haplotype MPRA
Bioconductor
written 3 months ago by
Rita
• 0
0
votes
1
reply
311
views
Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
scRNAseq
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 9 weeks ago by
leixu0212
• 0
0
votes
0
replies
327
views
Corrupted SQLite while trying to install PANTHER.db?
SQLite
PANTHER.db
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Alan
• 0
0
votes
1
reply
410
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4
org.Ss.eg.db
AnnotationDbi
written 4 months ago by
Adam Munhall
• 0
0
votes
1
reply
356
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment
singlecelle
scRNAseq
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Francesco Silvestro
• 0
0
votes
1
reply
383
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Jesus
• 0
0
votes
2
replies
361
views
3-factor DESeq2 trime-series analysis
time-series
DESeq2
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
gogeni5529
• 0
0
votes
1
reply
311
views
Questions about pseudo counts from RUVSeq
RUVSeq
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Yuxiang
• 0
0
votes
0
replies
331
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
jalte.jelsing
• 0
0
votes
1
reply
337
views
GOseq Probability Weight Function bad fit
goseq
written 3 months ago by
francesca
• 0
0
votes
0
replies
169
views
[DESeq2] Changing dispersion estimates between runs of DESeq2
DESeq2
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 9 weeks ago by
colinmccornack
• 0
0
votes
2
replies
173
views
APAlyzer
APAlyzer
updated 8 weeks ago by
Kevin Blighe
★ 4.0k • written 8 weeks ago by
anjanaram1
▴ 10
2
votes
2
replies
313
views
Identifying differentially expressed genes in individual samples from a large cohort
limma
DifferentialExpression
8 weeks ago
jamie.gearing
▴ 60
0
votes
2
replies
252
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 8 weeks ago by
Guido Hooiveld
★ 4.1k • written 9 weeks ago by
Stephen Piccolo
▴ 600
1
vote
2
replies
310
views
Error installing Seqinfo
Seqinfo
S4Vectors
updated 8 weeks ago by
shepherl
4.3k • written 9 weeks ago by
fabio.marroni
• 0
1
vote
0
replies
122
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
9 weeks ago
Maria Doyle
▴ 110
0
votes
4
replies
274
views
Getting a large intercept with DESeq2
DESeq2
DifferentialExpression
TimeCourse
9 weeks ago • updated 8 weeks ago
Denise
• 0
2
votes
2
replies
238
views
Post translational modifications and phosphoproteomics in limpa?
limpa
updated 2 days ago by
Gordon Smyth
53k • written 9 weeks ago by
james.eapen
• 0
46,726 results • Page
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Comment: Pairwise comparison of multiple groups with different base
by
ja569116
• 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
TikTsossakaas33ocissalpc
• 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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