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Tutorial:
Updated Support Site Editor
support.bioconductor.org
editor
markdown
updates
Tutorial
written 7.1 years ago by
shepherl
4.3k
0
votes
0
replies
14
views
Spam:
PokeChill
customCMPdb
AMOUNTAIN
28 days ago
play
0
0
votes
1
reply
2.6k
views
Tutorial:
[LIBD rstats club] Bioconductor overview
bioconductor
libdrstats
Tutorial
written 5.8 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
1
reply
306
views
msmsTests, inconsistent sign between lFC.Av and LogFC
msmsTests
Proteomics
4 weeks ago
Ben
• 0
0
votes
1
reply
198
views
DESeq2 for 16S rRNA Analysis
DESeq2
updated 4 weeks ago by
James W. MacDonald
68k • written 4 weeks ago by
lizflor
• 0
0
votes
1
reply
273
views
News:
Deadline Extended: EuroBioC2026 Call for Abstracts
Bioconductor
Conference
written 4 weeks ago by
laurah ondari
• 0
0
votes
3
replies
1.7k
views
ChAMP trouble reading csv file
ChAMP
written 2.6 years ago by
Keasiykan
• 0
0
votes
5
replies
308
views
Lowly expressed genes reported as significant when using lfcThreshold in DESeq
RNASeq
DESeq2
DifferentialExpression
updated 4 weeks ago by
Michael Love
43k • written 4 weeks ago by
Ahmed Salah
• 0
0
votes
2
replies
256
views
lfc shrinkage estimator in DESeq2
DESeq2
written 4 weeks ago by
julia_mcdonough
• 0
2
votes
1
reply
261
views
Array weights in dpcDE
limpa
updated 4 weeks ago by
Gordon Smyth
53k • written 4 weeks ago by
Matt
• 0
0
votes
2
replies
214
views
Justify title track when rotation = 0
Gviz
gviz
written 5 weeks ago by
Xenia
• 0
0
votes
2
replies
224
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 5 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
DN
• 0
0
votes
13
replies
945
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 4 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
chp265
• 0
0
votes
1
reply
320
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
written 5 weeks ago by
Xenia
• 0
0
votes
2
replies
388
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 5 weeks ago by
LillianaVolkman99
• 0 • written 6 weeks ago by
Omer
• 0
0
votes
6
replies
769
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 5 weeks ago by
Martin Morgan
25k • written 12 weeks ago by
Benjamin
• 0
0
votes
1
reply
355
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 5 weeks ago by
ATpoint
★ 5.0k • written 6 weeks ago by
ja569116
• 0
2
votes
6
replies
647
views
limpa analysis advice
limpa
updated 4 weeks ago by
Gordon Smyth
53k • written 6 weeks ago by
SamGG
▴ 360
0
votes
1
reply
231
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
written 6 weeks ago by
laurah ondari
• 0
4
votes
2
replies
551
views
When to use edgeR or limma
edgeR
limma
updated 6 weeks ago by
Gordon Smyth
53k • written 6 weeks ago by
abzhang97
• 0
1
vote
3
replies
311
views
Incosistencies in buildSNNGraph() function
scran
seurat
written 7 weeks ago by
Lucas
• 0
0
votes
2
replies
1.4k
views
A problem occurs when running the monocle2
monocle
written 5 months ago by
yuheng_yang
• 0
0
votes
7
replies
713
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 5 weeks ago by
Gordon Smyth
53k • written 6 weeks ago by
emily.wolfrum
• 0
3
votes
4
replies
495
views
Question about the filterByExpr function inputs in edgeR
RNASeq
filter
design
edgeR
model.matrix
6 weeks ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
196
views
Development of MSstat workflow to analyze DIA time series data
MSstats
updated 6 weeks ago by
Gordon Smyth
53k • written 6 weeks ago by
sithurandi
• 0
0
votes
0
replies
400
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
6 weeks ago
srkingwu
• 0
8
votes
8
replies
3.0k
views
Confounded design, batch effect correction (edgeR)
rnaseq
edger
differential gene expression
batch effect
written 7.5 years ago by
Laura
▴ 20
0
votes
1
reply
192
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
written 6 weeks ago by
henry.tietz
• 0
3
votes
4
replies
542
views
Clarification on counting in Rsubread (featureCounts)
featureCounts
Rsubread
updated 6 weeks ago by
Gordon Smyth
53k • written 10 weeks ago by
Luca
• 0
0
votes
1
reply
186
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
written 6 weeks ago by
Frances Turner
▴ 20
0
votes
1
reply
247
views
How to convert .raw data for use in xcms
xcms
written 6 weeks ago by
Monica
• 0
0
votes
1
reply
410
views
Job:
Open Positions for Doctoral Researchers in Molecular Medicine
JobPosting
written 6 weeks ago by
rubina.tabassum
• 0
1
vote
1
reply
220
views
News:
Bioconductor Maintainer Application
maintainer
policy
Bioconductor
Devel
devel
written 7 weeks ago by
shepherl
4.3k
0
votes
1
reply
571
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 12 months ago by
info
▴ 10
0
votes
1
reply
505
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 7 months ago by
Wei Shi
★ 3.6k
0
votes
2
replies
2.6k
views
ChAMP pipeline error (champ.import)
software error
written 6.9 years ago by
mhebba
• 0
0
votes
2
replies
475
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
7 weeks ago • updated 5 weeks ago
Andrew Pattison
• 0
0
votes
1
reply
284
views
Job:
Jobs at Ensembl
ensembldb
updated 21 days ago by
frostybuddyy
• 0 • written 7 weeks ago by
Aleena_Ensembl
▴ 30
0
votes
0
replies
11
views
Spam:
Is there a way to map Excel fields to VCF contacts for accurate conversion?
ComputationalChemistry
Technology
Software
Website
updated 7 weeks ago by
shepherl
4.3k • written 7 weeks ago by
witebir963
0
0
votes
0
replies
160
views
Job:
Job:Computational Biologist position at the University of Alabama at Birmingham
hiring
RNASeq
JobPosting
SingleCell
SpatialData
7 weeks ago
lianov
• 0
2
votes
3
replies
296
views
please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Bioconductor
written 7 weeks ago by
Victor
▴ 10
2
votes
4
replies
360
views
Converting Probe IDs to HGNC symbols
Annotation
biomaRt
GEOquery
written 8 weeks ago by
Manav
▴ 10
0
votes
3
replies
424
views
How to do differential expresion across time serise with edgeR?
edgeR
timecoursedata
updated 8 weeks ago by
Gordon Smyth
53k • written 8 weeks ago by
petergrahamclark
▴ 10
2
votes
3
replies
642
views
Guitar R package requires update due to dependency GenomicFeatures
GenomicFeatures
Guitar
txdbmaker
GenomicRanges
written 8 weeks ago by
ferran.llobet.cabau
▴ 10
0
votes
2
replies
253
views
ATACseq rudimentary questions
ATACSeq
DiffBind
9 weeks ago • updated 8 weeks ago
4747
• 0
1
vote
2
replies
473
views
How to install packages such as TCGAbiolinks, SumarizedExperiment?
TCGAbiolinks
SummarizedExperiment
written 8 weeks ago by
NewRUser
• 0
0
votes
4
replies
5.8k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 2.9 years ago by
mauricio.microbiol
• 0
0
votes
2
replies
355
views
wgcna module preseravtion taking too long?
WGCNA
written 10 weeks ago by
lamia11me
• 0
0
votes
1
reply
430
views
Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 11 weeks ago by
Chaoability
• 0
0
votes
3
replies
486
views
DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
sva
lfcshrink
DESeq2
10 weeks ago • updated 6 weeks ago
ja569116
• 0
46,780 results • Page
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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