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2
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529
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Feedback needed on new user-friendly BED file tool
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updated 6 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
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293
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sigDF object in sesame
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416
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Create consensusMatrix for codon bases
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2
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479
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Memory error while running alignments
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updated 6 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
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310
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Finding duplicated entries in GRangesList
GenomicRanges
updated 6 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
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2
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337
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DESeq2 on non-RNASeq counts data
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written 4 months ago by • 0
0
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2
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487
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After running samtools, the featureCounts command crashed.
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updated 5 weeks ago by • 0 • written 3 months ago by • 0
0
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1
reply
547
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Problem with the TMB plot
Bioconductor
updated 6 weeks ago by ★ 4.0k • written 3 months ago by • 0
0
votes
1
reply
318
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mzR-Rcpp compiler version issue
Rcpp Perseus mzR
updated 6 weeks ago by 1.6k • written 4 months ago by • 0
2
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3
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544
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DESeq2 design for haplotype MPRA
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written 12 weeks ago by • 0
0
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1
reply
238
views
Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
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updated 7 weeks ago by ★ 4.0k • written 8 weeks ago by • 0
0
votes
0
replies
307
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Corrupted SQLite while trying to install PANTHER.db?
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updated 7 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
1
reply
369
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4 org.Ss.eg.db AnnotationDbi
written 4 months ago by • 0
0
votes
1
reply
336
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment singlecelle scRNAseq
updated 7 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
1
reply
360
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 7 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
2
replies
344
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3-factor DESeq2 trime-series analysis
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updated 7 weeks ago by ★ 4.0k • written 3 months ago by • 0
0
votes
1
reply
295
views
Questions about pseudo counts from RUVSeq
RUVSeq
updated 7 weeks ago by ★ 4.0k • written 3 months ago by • 0
0
votes
0
replies
303
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Problem with viewGO(ref_path) in SpliceWiz
Bioconductor SpliceWiz
updated 7 weeks ago by ★ 4.0k • written 3 months ago by • 0
0
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1
reply
327
views
GOseq Probability Weight Function bad fit
goseq
written 3 months ago by • 0
0
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0
replies
152
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[DESeq2] Changing dispersion estimates between runs of DESeq2
DESeq2
updated 7 weeks ago by ★ 4.0k • written 7 weeks ago by • 0
0
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2
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165
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APAlyzer
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updated 7 weeks ago by ★ 4.0k • written 7 weeks ago by ▴ 10
2
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2
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297
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Identifying differentially expressed genes in individual samples from a large cohort
limma DifferentialExpression
7 weeks ago • updated 6 weeks ago jamie.gearing ▴ 60
0
votes
2
replies
221
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 7 weeks ago by ★ 4.1k • written 7 weeks ago by ▴ 600
1
vote
2
replies
286
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Error installing Seqinfo
Seqinfo S4Vectors
updated 7 weeks ago by 4.2k • written 7 weeks ago by • 0
1
vote
0
replies
102
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News: Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
7 weeks ago Maria Doyle ▴ 110
0
votes
4
replies
246
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Getting a large intercept with DESeq2
DESeq2 DifferentialExpression TimeCourse
7 weeks ago Denise • 0
2
votes
2
replies
226
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Post translational modifications and phosphoproteomics in limpa?
limpa
7 weeks ago • updated 6 weeks ago james.eapen • 0
0
votes
1
reply
142
views
Add additional maintainer for MOFA2
MOFA2
updated 8 weeks ago by 4.2k • written 8 weeks ago by • 0
1
vote
3
replies
507
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gene Set with high AUC score but no cells assigned to cell type
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3 months ago • updated 6 weeks ago gogeni5529 • 0
0
votes
2
replies
308
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featureCounts -L: high unassigned:mapq fraction
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written 3 months ago by • 0
1
vote
2
replies
466
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Streamlining the computing time for MiloDE p-value correction in large dataset?
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updated 8 weeks ago by ★ 4.0k • written 3 months ago by • 0
1
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2
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408
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incomplete imputation of missing values with LEA impute() function
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updated 8 weeks ago by ★ 4.0k • written 3 months ago by • 0
0
votes
2
replies
414
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A problem occurs when running the monocle2
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5
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3
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464
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Issues with downloading biomaRt - SeqInfo and S4 Vectors
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updated 8 weeks ago by 68k • written 8 weeks ago by ▴ 10
2
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2
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Bioconductor
3 months ago • updated 8 weeks ago Matthew Thornton ▴ 390
0
votes
2
replies
177
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VariantAnnotation not does escape = within header string quotes
VariantAnnotation
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0
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2
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263
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Setting up a DESeq2 Design with Paired Data
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160
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Suppress warning in RHDF5 write
rhdf5
8 weeks ago nicolas.lhuillier • 0
2
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2
replies
191
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Failure to download resources (MeSHDb) from AnnotationHub
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3
replies
290
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4
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439
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updated 7 weeks ago by • 0 • written 9 weeks ago by ▴ 10
0
votes
1
reply
250
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Question about collapsing ASVs by genus level during DESeq2 analysis
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updated 9 weeks ago by 43k • written 3 months ago by • 0
1
vote
2
replies
380
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Can limma be used with module eigengenes instead of genes?
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0
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7
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0
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Spam: The Neon Code PolyTrack
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9 weeks ago residentialplayt 0
2
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0
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reply
345
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0
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1
reply
335
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News: Save the Date: BioC2026
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written 10 weeks ago by 4.2k
0
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1
reply
204
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bake() and cool() resulting in an empty table
dar
updated 10 weeks ago by • 0 • written 10 weeks ago by • 0
46,709 results • Page 2 of 935
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
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When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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