0
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0
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8
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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0
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9
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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3
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6
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1.0k
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
RNASeq DESeq2 DifferentialExpression RNASeqData
written 8 weeks ago by • 0
0
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1
reply
1.3k
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two questions about limma
Microarray limma Microarray limma
updated 7 weeks ago by 53k • written 18.9 years ago by ▴ 240
0
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1
reply
218
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Question about DESeq2 Design for Paired Treatment Study
DESeq2
updated 7 weeks ago by ★ 5.0k • written 7 weeks ago by • 0
0
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1
reply
320
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News: EuroBioC2026 abstract submission is open!
Conference Bioconductor
written 7 weeks ago by • 0
0
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1
reply
184
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PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
written 7 weeks ago by • 0
0
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3
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315
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DECIPHER DesignProbes unable to design FISH-probes
decipher FISH DECIPHER FISH-probe probe-design
written 7 weeks ago by • 0
0
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2
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1.3k
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p.adjust BH Question
written 14.4 years ago by ▴ 10
1
vote
4
replies
470
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Large logFC but somewhat high FDR
limpa
7 weeks ago • updated 6 weeks ago JKim • 0
0
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1
reply
300
views
Job: Bioinformatician at the Lausanne University Hospital
GenomicRanges JobPosting
written 7 weeks ago by ▴ 20
3
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5
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558
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upstream git branches of bioc-release
Bioconductor
written 7 weeks ago by ▴ 10
0
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2
replies
240
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limpa - drivers for unusually high standard error?
limpa
updated 7 weeks ago by 53k • written 7 weeks ago by • 0
1
vote
4
replies
2.0k
views
How can I correctly use phyloseq with Docker?
phylo phyloseq Docker
updated 5 weeks ago by • 0 • written 8 months ago by • 0
0
votes
1
reply
469
views
Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
flowWorkspace FlowCytometry
updated 8 weeks ago by ★ 4.0k • written 6 months ago by • 0
0
votes
2
replies
1.2k
views
Install old version of DESeq2
apeglm Install DESeq2 version
updated 8 weeks ago by ★ 4.0k • written 6 months ago by • 0
0
votes
1
reply
443
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO Bioconductor Arabidopsis_thaliana_Data
updated 8 weeks ago by ★ 4.0k • written 6 months ago by • 0
0
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2
replies
441
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ORFik: spliced 5utr regions
splicing 5utr ORFik
updated 8 weeks ago by ★ 4.0k • written 6 months ago by • 0
0
votes
2
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608
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BiocManager::install() doesn't work
Install Biocond
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
2
replies
410
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Results with PON give more variants
mutect2 variants pon
written 6 months ago by ▴ 10
0
votes
2
replies
400
views
Empty boxes in treemap plot rrvgo package
rrvgo
written 5 months ago by • 0
0
votes
1
reply
332
views
CRISPRSeek Question: changing weight and gRNA.size causes error
CRISPRseek CRISPR
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
2
replies
565
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Feedback needed on new user-friendly BED file tool
bedbaser offtopic
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
1
reply
309
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sigDF object in sesame
sesame sesameData
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
3
replies
431
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Create consensusMatrix for codon bases
Biostrings
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
2
replies
501
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Memory error while running alignments
DECIPHER Alignment
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
1
vote
11
replies
2.1k
views
Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
DESeq2 scRNAseq
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
1
reply
334
views
Finding duplicated entries in GRangesList
GenomicRanges
updated 8 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
2
replies
353
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DESeq2 on non-RNASeq counts data
DESeq2
written 5 months ago by • 0
0
votes
2
replies
510
views
After running samtools, the featureCounts command crashed.
RNASeqData Bioconductor RNASeq
updated 6 weeks ago by • 0 • written 4 months ago by • 0
0
votes
2
replies
617
views
Problem with the TMB plot
Bioconductor
written 4 months ago by • 0
0
votes
1
reply
341
views
mzR-Rcpp compiler version issue
Rcpp Perseus mzR
updated 8 weeks ago by 1.6k • written 4 months ago by • 0
2
votes
3
replies
573
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DESeq2 design for haplotype MPRA
Bioconductor
written 3 months ago by • 0
0
votes
1
reply
311
views
Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
scRNAseq
updated 8 weeks ago by ★ 4.0k • written 9 weeks ago by • 0
0
votes
0
replies
327
views
Corrupted SQLite while trying to install PANTHER.db?
SQLite PANTHER.db
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
1
reply
410
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4 org.Ss.eg.db AnnotationDbi
written 4 months ago by • 0
0
votes
1
reply
356
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment singlecelle scRNAseq
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
1
reply
383
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
2
replies
361
views
3-factor DESeq2 trime-series analysis
time-series DESeq2
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
1
reply
311
views
Questions about pseudo counts from RUVSeq
RUVSeq
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
0
replies
331
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor SpliceWiz
updated 8 weeks ago by ★ 4.0k • written 4 months ago by • 0
0
votes
1
reply
337
views
GOseq Probability Weight Function bad fit
goseq
written 3 months ago by • 0
0
votes
0
replies
169
views
[DESeq2] Changing dispersion estimates between runs of DESeq2
DESeq2
updated 8 weeks ago by ★ 4.0k • written 9 weeks ago by • 0
0
votes
2
replies
173
views
APAlyzer
APAlyzer
updated 8 weeks ago by ★ 4.0k • written 8 weeks ago by ▴ 10
2
votes
2
replies
313
views
Identifying differentially expressed genes in individual samples from a large cohort
limma DifferentialExpression
8 weeks ago jamie.gearing ▴ 60
0
votes
2
replies
252
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 8 weeks ago by ★ 4.1k • written 9 weeks ago by ▴ 600
1
vote
2
replies
310
views
Error installing Seqinfo
Seqinfo S4Vectors
updated 8 weeks ago by 4.3k • written 9 weeks ago by • 0
1
vote
0
replies
122
views
News: Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
9 weeks ago Maria Doyle ▴ 110
0
votes
4
replies
274
views
Getting a large intercept with DESeq2
DESeq2 DifferentialExpression TimeCourse
9 weeks ago • updated 8 weeks ago Denise • 0
2
votes
2
replies
238
views
Post translational modifications and phosphoproteomics in limpa?
limpa
updated 2 days ago by 53k • written 9 weeks ago by • 0
46,726 results • Page 2 of 935
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Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
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It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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