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832
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Problem in execuation of filterAndTrim command in DADA2
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18 months ago • updated 17 months ago abhisek001 • 0
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18 months ago mohammedtoufiq91 ▴ 10
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updated 18 months ago by • 0 • written 18 months ago by ▴ 10
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698
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18 months ago euge.eugenio ▴ 20
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ERROR; return code from pthread_create() is 22
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18 months ago Anna • 0
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18 months ago Edward • 0
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all variables in design formula must be columns in colData (Deseq2) error
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18 months ago Galina • 0
0
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18 months ago Bibi • 0
0
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6
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18 months ago Ken C • 0
2
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4
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DESeq2- Mysterious interaction suppresses DEGs
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updated 18 months ago by 43k • written 18 months ago by • 0
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Minor allele data from grch38 giving NAs from getBM ?
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18 months ago Abiologist • 0
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STRINGdb : error with string_db$plot_network()
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updated 18 months ago by ▴ 110 • written 18 months ago by • 0
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DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
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18 months ago makala • 0
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
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19 months ago • updated 18 months ago Matthew Thornton ▴ 390
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18 months ago Anton01 • 0
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18 months ago danalvoronov ▴ 10
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18 months ago k200987 • 0
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18 months ago Patadù ▴ 20
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18 months ago Yael • 0
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How to design DEXSeq formula for multiple variables
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19 months ago • updated 18 months ago Sara • 0
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Difference in Contrast in DiffBind
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18 months ago user_bioinfo • 0
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updated 18 months ago by 43k • written 19 months ago by • 0
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19 months ago • updated 18 months ago Daniel • 0
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normalization across different species for DESeq2 analysis
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updated 19 months ago by 43k • written 19 months ago by • 0
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19 months ago Aleena_Ensembl ▴ 30
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Can I trust the differential expression analysis when the two groups overlap on the PCA?
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Store output of matchPWM()
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19 months ago mat149 ▴ 80
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
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19 months ago • updated 18 months ago BioinfGuru ▴ 70
46,691 results • Page 23 of 934
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
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The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
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