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Job:
Group Leader (Faculty) positions at EMBL-EBI, Cambridge UK
research
exciting
career
escape
20 months ago
Wolfgang Huber
★ 13k
1
vote
3
replies
1.1k
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 20 months ago by
damian.szk
▴ 110 • written 20 months ago by
h.valipour.k
• 0
0
votes
4
replies
1.0k
views
Add mask to BSgenome
Mask
BSgenome.Hsapiens.UCSC.hg38.masked
20 months ago
shraddha.pai
• 0
0
votes
0
replies
457
views
does TMixClust recognise biological replicates
TMixClust
20 months ago
ta_awwad
▴ 10
0
votes
1
reply
557
views
multiple condition issue running DESeq
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
Kelly
• 0
0
votes
4
replies
1.1k
views
Create count matrix from multible quant sf files from different directories
tximportData
tximport
salmon
20 months ago
JG13
• 0
2
votes
2
replies
958
views
Control group between 2 batches have different expression in RNAseq data
BatchQC
BatchEffect
rnaseqGene
Normalization
updated 20 months ago by
jessica.anderson
▴ 10 • written 20 months ago by
Đình Vinh
• 0
2
votes
2
replies
1.1k
views
How to remove batch effect to combine RNAseq data from 2 different experiments?
BatchQC
BatchEffect
RNASeq
updated 20 months ago by
jessica.anderson
▴ 10 • written 20 months ago by
ttt
• 0
1
vote
2
replies
2.3k
views
How to compare subset of samples from VCF files
VCF
VariantAnnotation
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
Marco
• 0
0
votes
3
replies
806
views
Ploting of normalized counts after batch removal
DESeq2
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
altuda
▴ 10
0
votes
0
replies
930
views
How to fix fix $PnR in flowCore
flowCore
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
Elle
• 0
1
vote
1
reply
1.5k
views
News:
Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia
BioCAsia
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BioC
written 3.2 years ago by
Peter Hickey
▴ 760
0
votes
0
replies
493
views
Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
Randall
• 0
0
votes
3
replies
1.1k
views
Gviz and custom database
Gviz
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
luigi.faino
• 0
1
vote
1
reply
533
views
makeExampleDESeqDataSet using pilot data
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
li.d.peck
• 0
0
votes
0
replies
554
views
EuroBioC2024 Registration is Open!
Community
Conference
Bioconductor
EuroBioC2024
20 months ago
Maria Doyle
▴ 110
0
votes
2
replies
759
views
Best way to describe DEseq2 design
DESeq2
updated 20 months ago by
swbarnes2
★ 1.4k • written 20 months ago by
YouCook
• 0
2
votes
3
replies
1.9k
views
Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
Biostrings
updated 20 months ago by
Hervé Pagès
16k • written 20 months ago by
Ali Osman
• 0
0
votes
0
replies
480
views
Message 'invalid data format' on impute.MAR function
impute
20 months ago
marcosdossantosferreira
• 0
0
votes
1
reply
1.4k
views
scds creates sparse->dense coercion
scds
20 months ago • updated 18 months ago
Lluís Revilla Sancho
▴ 760
1
vote
2
replies
898
views
Deseq2
DESeq2
rnaseqGene
updated 20 months ago by
Ram
▴ 220 • written 20 months ago by
Sudip
• 0
0
votes
0
replies
413
views
Import_picrust2 question
microbiomeMarker
20 months ago
Jay
• 0
0
votes
1
reply
1.0k
views
Error in render R qmd document (could not find function "process")
quantro
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
Chutian
• 0
0
votes
0
replies
899
views
Job:
Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell
Transcriptomics
SpatialDatasets
SpatialData
20 months ago
Silvio
• 0
1
vote
1
reply
617
views
LRT, pairwise comparisons and p-value adjustment
DESeq2
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
boczniak767
▴ 740
0
votes
6
replies
1.2k
views
Counter-directional LFC shrinkage
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
ennui
• 0
0
votes
3
replies
2.0k
views
ChAMP not available for bioconductor 3.19
Bioconductor
ChAMP
updated 20 months ago by
shepherl
4.3k • written 20 months ago by
Macsue
• 0
1
vote
4
replies
1.7k
views
Error in gseDO function
DOSE
gsea
20 months ago
Javier
• 0
0
votes
0
replies
500
views
gmapR source package contains x86_64 binaries
gmapR
20 months ago
Tom Lin
• 0
0
votes
0
replies
25
views
Spam:
Drug Discovery
flowBeads
20 months ago
Zoe
0
0
votes
2
replies
1.4k
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
updated 20 months ago by
Guido Hooiveld
★ 4.1k • written 20 months ago by
Sara
• 0
1
vote
2
replies
1.1k
views
conumee with Infinium MethylationEPIC v2.0
conumee
written 20 months ago by
Maximus
▴ 10
0
votes
3
replies
2.3k
views
GSVA function
DESeq2
GSVA
ssGSEA
updated 20 months ago by
Robert Castelo
★ 3.4k • written 20 months ago by
michelafrancesconi8
• 0
0
votes
0
replies
621
views
News:
Legacy Bioconductor Installation
Installation
Bioconductor
20 months ago
shepherl
4.3k
1
vote
9
replies
2.1k
views
Cannot install oligo on Fedora
oligo
source
Install
20 months ago
Guido Hooiveld
★ 4.1k
0
votes
5
replies
1.2k
views
Error when running topGO with KS statistic and elim agorithm
topGO
20 months ago
A. denDekker
• 0
0
votes
2
replies
1.4k
views
Cluster columns in Pheatmap
geneexp
pheatmap
heatmaps
cluster
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
pehove2385
• 0
0
votes
2
replies
1.1k
views
Normalisation using clinical traits in RNA seq using DESeq2
DESeq2
clinicaltraits
Normalization
batchnormalisation
20 months ago
sukeshinik5
▴ 20
0
votes
0
replies
753
views
News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology
Bioconductor
Network
20 months ago
info
▴ 10
0
votes
4
replies
2.4k
views
Volcano plot of scRNA-seq data not "centered"
DESeq2
updated 20 months ago by
ATpoint
★ 5.0k • written 20 months ago by
tjl
• 0
0
votes
1
reply
643
views
News:
Bioconductor Build System
Builds
Bioconductor
written 20 months ago by
shepherl
4.3k
8
votes
6
replies
10k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler
enrichplot
updated 20 months ago by
jovel_juan
▴ 30 • written 6.7 years ago by
charles.foster
▴ 180
0
votes
0
replies
696
views
News:
BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024
Conference
Bioconductor
Community
20 months ago
Maria Doyle
▴ 110
0
votes
6
replies
2.4k
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
20 months ago
atan
• 0
5
votes
6
replies
5.3k
views
Not able to install any Bioconductor 3.18 package [unable to access index]
Install
updated 20 months ago by
merv
▴ 150 • written 20 months ago by
Lorena Pantano
▴ 140
2
votes
2
replies
1.2k
views
unable to access bioconductor packages - qvalue installation failed...
Install
updated 20 months ago by
shepherl
4.3k • written 20 months ago by
gabry.scata
▴ 10
2
votes
2
replies
1.4k
views
Get gene symbols for a set of hg19 coordinates
annotation
hg19
20 months ago
pcantalupo
▴ 10
0
votes
0
replies
780
views
Job:
Bioinformatics MSc University of York
bioinformatics
JobPosting
20 months ago
Daphne
• 0
2
votes
4
replies
1.8k
views
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Install
GenomeInfoDbData
GenomeInfoDb
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
Brandon
▴ 20
1
vote
3
replies
4.7k
views
WGNCA kME vs. kIM
WGCNA
updated 20 months ago by
Vitor
• 0 • written 10.4 years ago by
akridgerunner
▴ 30
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