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GOseq tutorial for not supported organisms: am I doing it correctly?
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9.7 years ago CandiceChuDVM ▴ 40
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Error installing AnnotationHub on Fedora
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nice 3D displays for PCA analysis
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9.7 years ago David ▴ 860
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Difference in Wald and LRT test for two condition RNAseq data.
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updated 9.7 years ago by 43k • written 9.7 years ago by • 0
2
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Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
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updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
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error in noGGi
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9.7 years ago awakumaya • 0
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Bioconductor HTML docs seem to be broken
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9.7 years ago igor ▴ 50
0
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1
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help installing bioconductor workflows
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9.7 years ago rocknrollscience • 0
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RIPSeeker error Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : subscript contains NAs or out-of-bounds indices
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9.9 years ago • updated 9.7 years ago xfwang ▴ 20
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Ensembl bacteria not accessible from biomaRt
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 20
2
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DESeq2 transformation to use for PCA plot
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9.7 years ago Shobana Sekar ▴ 20
0
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Ensembl version from non-vertebrate biomaRt
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updated 9.7 years ago by ▴ 70 • written 9.7 years ago by ▴ 20
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updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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Trouble with GO.db - installation of package GO.db had non-zero exit status
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9.7 years ago christin.berlin • 0
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11
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RBGL installation error
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Error in TopologyGSA
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9.7 years ago saamar.rajput • 0
2
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4
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parseCSQToGRanges() : mcols are all factors, despite some numeric fields
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 350
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10
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updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 90
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0
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ChAMP ComBat step error: Error in if (min(beta.c) == 0) { : missing value where TRUE/FALSE needed
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9.7 years ago Daniel E. Weeks ▴ 30
0
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0
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cell analysis- significance output perturbed in shiny environment
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9.7 years ago christopher.clarskon15 ▴ 20
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Lumi Control Data
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9.7 years ago m.a.bentley • 0
3
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Can't make working link in roxygen2
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updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 370
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Can't upgrade to Bioconductor 3.3?
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9.7 years ago enricoferrero ▴ 680
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Analysis of Various chemical compounds on Cytotoxity Cell lines
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9.7 years ago ramars • 0
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DESeq2 size factors estimation after RSEM quantification
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9.7 years ago Hugo Varet ▴ 80
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9.7 years ago TimothéeFlutre ▴ 80
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flowCore: specify polygon coordinates
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updated 9.7 years ago by 4.2k • written 9.7 years ago by • 0
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DEXSeq. Error: could not find function "DEXSeqDataSetFromHTSeq"
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9.7 years ago peter.thorpe • 0
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Can we use Entrez IDs for GOSeq?
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updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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rsbml: can not link to SUNDIALS
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9.7 years ago ivo • 0
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CellMix compare results to CellCODE
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overlapsAny for elements in GRangesList
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DESeqDataSet creation error
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Workflows in BioC 3.3
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9.7 years ago Axel Klenk ★ 1.1k
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DESeq normalization seems to reverse the directionality of log2FoldChange - is this normal?
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Understanding the design matrix
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Getting gene ID's from camera results
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GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
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Limma LogFC hand calculation
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Regarding Somatic Mutation Signature
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updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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Error during installation of ChemmineOB R package
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rtrackylayer import bedpe error
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How does csaw handle multiply aligned reads?
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how to convert emsembl identiers with ENTERz ID in a logfoldchange files generated by DESeq2 to be used for SPIA
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LIMMA gives different logFC
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updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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