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3
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1.4k
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Using injectSNPs with a custom set of SNPs
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updated 2.3 years ago by ★ 5.0k • written 2.3 years ago by ▴ 20
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is Dada2 biased toward a particular sequence ?
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2.3 years ago Sara • 0
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DESeq2: how could the lower mean abundance treatment show a positive and significant LFC?
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Retrieve gene ontologies (GO) for genes and a species by REST API
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2.3 years ago Rockbar • 0
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Question about creating custom organism database with AnnotationForge
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Will DESeq2 be appropriate tool for analysis?
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2.3 years ago Karthik • 0
0
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1
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1.9k
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DESeq2 Error in Results Contrast and ResultsNames
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updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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2.3 years ago • updated 2.1 years ago Lorenzo • 0
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bioNeuro plot_expression_profile - how to order samples in plot output
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2.3 years ago Christopher ▴ 20
0
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0
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Dual species RNA-seq, Library size and normalization
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2.3 years ago Florian • 0
0
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1
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2.4k
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choosing rank for GSEA
gsea DESeq2
updated 2.3 years ago by ★ 5.0k • written 2.3 years ago by • 0
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2.3 years ago Xinqi • 0
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2
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
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2.3 years ago Thon • 0
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0
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Using DADA2 for finding viral sequence variants
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2.3 years ago Sara • 0
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5
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1.2k
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Duplicated expression values?
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written 2.3 years ago by • 0
2
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2
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949
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"Details" section for specific software packages
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updated 2.3 years ago by ★ 6.6k • written 2.3 years ago by • 0
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edgeR heatmap construction and interpretation
heatmaps
updated 2.3 years ago by 53k • written 2.3 years ago by • 0
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2
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917
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2.3 years ago Benji Bromberg ▴ 30
1
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1
reply
1.1k
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Multiple comparison using DESeq2
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updated 2.3 years ago by 68k • written 2.3 years ago by • 0
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3
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Tximport Error - transcripts in quant files are not the same as tx2gene
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updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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2.3 years ago Bine ▴ 50
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0
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How many ancestries to send in admixMap() when doing a two-way analysis?
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2.3 years ago mailtoshivam13 • 0
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2
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Using dplyr commands with DataFrame objects
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2.3 years ago GE • 0
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4
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updated 2.3 years ago by ★ 4.1k • written 2.3 years ago by 4.3k
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enrichPlot error when plotting topGO results
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updated 2.3 years ago by 68k • written 2.3 years ago by • 0
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GenomeInfoDbData version 1.2.9
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updated 2.3 years ago by 4.3k • written 2.3 years ago by • 0
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5
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minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
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2.3 years ago dorota.komar • 0
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updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 80
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2.3 years ago mmisak • 0
0
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866
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Issue with weights in voomLmFit()
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updated 14 months ago by 53k • written 2.3 years ago by ▴ 170
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2
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2.3 years ago matthew.sinton • 0
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2.3 years ago Pufall, Miles A ▴ 30
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4
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2.3 years ago Erica • 0
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1.3k
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updated 2.3 years ago by • 0 • written 4.5 years ago by • 0
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updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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2.3 years ago georgii.vdovin • 0
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0
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2.3 years ago nromerov • 0
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3
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edgeR: Time course RNA-seq experiments
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DESeq2: Design model includes sex but only one female
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updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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Installing Gpart
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updated 2.3 years ago by 68k • written 2.3 years ago by • 0
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limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
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updated 2.3 years ago by 53k • written 2.3 years ago by • 0
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7
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1.9k
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DuplicateCorrelation() block by duplicate sample or by cell line ?
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updated 2.1 years ago by 53k • written 2.3 years ago by • 0
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SeqSQC R library, functions PCA and IBD not working
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2.3 years ago ttom ▴ 10
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DeSeq2 normalization 16S
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updated 2.3 years ago by 43k • written 2.3 years ago by • 0
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limma: More differentially expressed genes when factor included in model than when used as blocking factor
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updated 2.3 years ago by 53k • written 2.3 years ago by ▴ 180
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DESeq2 : standardising variation between treatments
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2.3 years ago ar14g12 • 0
0
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2
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Issues with ddseq2 for treatment response factoring in different KO clones
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updated 2.3 years ago by ★ 1.4k • written 2.3 years ago by • 0
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Subsetting cells from a single cell experiment
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written 2.3 years ago by • 0
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