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Creation
Replies
Rank
Views
Votes
1
vote
3
replies
1.4k
views
Using injectSNPs with a custom set of SNPs
SNPlocs
BSgenome
written 2.3 years ago by
Stevie Pederson
• 0
6
votes
7
replies
1.8k
views
[Bug] Segfault in edgeR::cpm
edgeR
segfault
updated 2.3 years ago by
ATpoint
★ 5.0k • written 2.3 years ago by
jonas.freimuth
▴ 20
0
votes
0
replies
781
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
2.3 years ago
Sara
• 0
0
votes
2
replies
797
views
DESeq2: how could the lower mean abundance treatment show a positive and significant LFC?
DESeq2
2.3 years ago
Roey Angel
• 0
0
votes
4
replies
1.8k
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO
ensembldb
2.3 years ago
Rockbar
• 0
2
votes
4
replies
1.5k
views
Question about creating custom organism database with AnnotationForge
AnnotationForge
2.3 years ago
Adrian
• 0
0
votes
0
replies
883
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
2.3 years ago
info
▴ 10
0
votes
2
replies
1.2k
views
Will DESeq2 be appropriate tool for analysis?
RNASeq
DESeq2
2.3 years ago
Karthik
• 0
0
votes
1
reply
1.9k
views
DESeq2 Error in Results Contrast and ResultsNames
DESeq2
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
J_Can
• 0
0
votes
2
replies
1.4k
views
recount3 monorail pipeline version
recount3
2.3 years ago • updated 2.1 years ago
Lorenzo
• 0
2
votes
0
replies
609
views
bioNeuro plot_expression_profile - how to order samples in plot output
plot_expression_profile
BioNERO
2.3 years ago
Christopher
▴ 20
0
votes
0
replies
774
views
Dual species RNA-seq, Library size and normalization
Normalization
edgeR
RNASeq
DESeq2
2.3 years ago
Florian
• 0
0
votes
1
reply
2.4k
views
choosing rank for GSEA
gsea
DESeq2
updated 2.3 years ago by
ATpoint
★ 5.0k • written 2.3 years ago by
Grace.Ciabattoni
• 0
0
votes
0
replies
1.1k
views
Pysam pileup and Rsamtools pileup output discrepancy
Pysam
pileup
Rsamtools
RNASeq
2.3 years ago
Xinqi
• 0
1
vote
2
replies
1.6k
views
AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
2.3 years ago
Thon
• 0
0
votes
0
replies
992
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
2.3 years ago
Sara
• 0
1
vote
5
replies
1.2k
views
Duplicated expression values?
depmap_copyNumber()
depmap
written 2.3 years ago by
davi.vuko
• 0
2
votes
2
replies
949
views
"Details" section for specific software packages
Website
updated 2.3 years ago by
Mike Smith
★ 6.6k • written 2.3 years ago by
Justin
• 0
0
votes
1
reply
2.8k
views
edgeR heatmap construction and interpretation
heatmaps
updated 2.3 years ago by
Gordon Smyth
53k • written 2.3 years ago by
ulin.1
• 0
1
vote
2
replies
917
views
Error creating SPIA data for KEGG Orthology (KO) Database KEGG xml files
SPIA
2.3 years ago
Benji Bromberg
▴ 30
1
vote
1
reply
1.1k
views
Multiple comparison using DESeq2
RNASeqData
RNASeq
DESeq2
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
fuqichen1
• 0
0
votes
3
replies
1.4k
views
Tximport Error - transcripts in quant files are not the same as tx2gene
salmon
tximport
deseq2
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
Kayleigh
• 0
3
votes
6
replies
2.6k
views
Subsetting Range Summarized Experiment
SummarizedExperiment
2.3 years ago
Bine
▴ 50
0
votes
0
replies
766
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS
admixMap
2.3 years ago
mailtoshivam13
• 0
0
votes
2
replies
2.0k
views
Using dplyr commands with DataFrame objects
S4Vectors
2.3 years ago
GE
• 0
0
votes
4
replies
2.2k
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 2.3 years ago by
Guido Hooiveld
★ 4.1k • written 2.3 years ago by
shepherl
4.3k
0
votes
2
replies
1.6k
views
enrichPlot error when plotting topGO results
topGO
enrichplot
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
nromerov
• 0
0
votes
1
reply
1.3k
views
GenomeInfoDbData version 1.2.9
GenomeInfoDbData
updated 2.3 years ago by
shepherl
4.3k • written 2.3 years ago by
remi.trimbour
• 0
0
votes
5
replies
1.9k
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi
limma
2.3 years ago
dorota.komar
• 0
2
votes
5
replies
1.9k
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge
makeOrgPackageFromNCBI
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
mat149
▴ 80
2
votes
2
replies
2.3k
views
Long-read mode in featureCounts
Rsubread
LongRead
2.3 years ago
mmisak
• 0
0
votes
1
reply
866
views
Issue with weights in voomLmFit()
limma
updated 14 months ago by
Gordon Smyth
53k • written 2.3 years ago by
gabriel.hoffman
▴ 170
0
votes
2
replies
1.6k
views
minfi differential methylation analysis errors
minfi
2.3 years ago
matthew.sinton
• 0
1
vote
2
replies
1.2k
views
tximeta error with vroom
tximeta
vroom
2.3 years ago
Pufall, Miles A
▴ 30
2
votes
4
replies
2.5k
views
Annotation Dbi Error: unable to find an inherited method for function 'x' for signature "MaskedBSgenome"
BSgenome.Hsapiens.UCSC.hg19
AnnotationDbi
2.3 years ago
Erica
• 0
0
votes
1
reply
1.3k
views
Multiple groups comparison using Linnorm
Linnorm
DEG
MultipleComparison
updated 2.3 years ago by
shunyip
• 0 • written 4.5 years ago by
awakumaya
• 0
1
vote
11
replies
3.2k
views
DESeq2 gene length normalisation
Normalization
DESeq2
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
cm15245
• 0
0
votes
2
replies
1.2k
views
Differential Expression Cutoffs for n = 1
clusterProfiler
DESeq2
2.3 years ago
georgii.vdovin
• 0
0
votes
0
replies
952
views
clusterProfiler code to GO enrichment analysis seems to be incomplete
clusterProfiler
DifferentialExpression
2.3 years ago
nromerov
• 0
1
vote
3
replies
947
views
edgeR: Time course RNA-seq experiments
edgeR
updated 2.3 years ago by
ATpoint
★ 5.0k • written 2.3 years ago by
SuperDad
• 0
3
votes
5
replies
1.8k
views
DESeq2: Design model includes sex but only one female
DESeq2
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
mphogan
• 0
0
votes
3
replies
1.6k
views
Installing Gpart
gpart
heat
heatmaps
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
Benjamin
• 0
2
votes
1
reply
1.6k
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 2.3 years ago by
Gordon Smyth
53k • written 2.3 years ago by
ningyuan
• 0
1
vote
7
replies
1.9k
views
DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition
RNASeqData
limma
BulkRNAseq
RNASeq
updated 2.1 years ago by
Gordon Smyth
53k • written 2.3 years ago by
Gimena
• 0
2
votes
2
replies
906
views
SeqSQC R library, functions PCA and IBD not working
SeqSQC
2.3 years ago
ttom
▴ 10
0
votes
1
reply
1.8k
views
DeSeq2 normalization 16S
DESeq2
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
Alexis
• 0
5
votes
3
replies
1.3k
views
limma: More differentially expressed genes when factor included in model than when used as blocking factor
voom
blocking
limma
updated 2.3 years ago by
Gordon Smyth
53k • written 2.3 years ago by
Gerhard Thallinger
▴ 180
0
votes
4
replies
1.5k
views
DESeq2 : standardising variation between treatments
RNA-seq
DESeq2
2.3 years ago
ar14g12
• 0
0
votes
2
replies
898
views
Issues with ddseq2 for treatment response factoring in different KO clones
Clonality
RNASeq
DESeq2
updated 2.3 years ago by
swbarnes2
★ 1.4k • written 2.3 years ago by
Jules
• 0
0
votes
1
reply
1.1k
views
Subsetting cells from a single cell experiment
SingleCellExperiment
written 2.3 years ago by
megan
• 0
46,730 results • Page
41 of 935
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Comment: Open Positions for Doctoral Researchers in Molecular Medicine
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TikTs33ssalpc
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This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
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Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
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