Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
2
replies
1.8k
views
Error in using makeOrgPackage-
makeOrgPackage
3.2 years ago
Qiang
• 0
0
votes
1
reply
1.6k
views
Error in is.data.frame(x) : 'list' object cannot be coerced to type 'double'
coxCoxproportionalhazardsregression
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
shuangshuang
• 0
1
vote
2
replies
1.4k
views
error loading kallisto output in tximport
file.exists
false
kallisto
tximport
3.2 years ago
cta
• 0
0
votes
0
replies
831
views
Trouble installing lpsymphony
lpsymphony
Maaslin2
3.2 years ago
Vic
• 0
0
votes
0
replies
766
views
polyester running question
polyester
3.2 years ago
Seongwoo Han
▴ 10
0
votes
1
reply
1.0k
views
Improving Immgen Annotations
Annotations
3.2 years ago
Adam
• 0
0
votes
1
reply
1.4k
views
Biocparallel Error "Error: BiocParallel errors element index: 1, 2, 3 first error: unable to find an inherited method for function ‘bpbackend’ fo…
R
OUTRIDER
BiocParallel
updated 3.0 years ago by
Christian Mertes
• 0 • written 3.2 years ago by
me.achleitner
• 0
0
votes
0
replies
986
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
3.2 years ago
Dennis.hinkel
• 0
0
votes
1
reply
1.1k
views
Downstream analysis with Differentially Expressed Genes
DESeq2
GO
goseq
FunctionalAnnotation
updated 3.2 years ago by
Laia
▴ 10 • written 3.2 years ago by
acram
• 0
0
votes
0
replies
1.2k
views
how to get protein sequence similarity and gaps % using Biostrings
sequence-similarity
gaps
homology
Biostrings
pairwise-alignment
3.2 years ago
biong
• 0
1
vote
3
replies
2.2k
views
Interpretation of LRT results
DESeq2
LRT
Heatmap
updated 2.3 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Laia
▴ 10
0
votes
2
replies
1000
views
Include multiple factors in the DESeq formula design or subset data to analyze
DESeq2
multiple
3.2 years ago
Yijing
• 0
0
votes
1
reply
3.1k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Mohamed
▴ 30
0
votes
1
reply
1.2k
views
ggcyto::autoplot legend for color scale gradient
ggcyto
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
alex
• 0
0
votes
0
replies
1.5k
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
3.2 years ago
Rob
• 0
1
vote
2
replies
2.2k
views
News:
Registrations are now open for BioC Asia 2022
Asia
BioCAsia
Conferences
Events
News
3.3 years ago • updated 3.2 years ago
Peter Hickey
▴ 760
1
vote
4
replies
2.5k
views
why there are read counts in the gene knock out rat RNA-seq data
ReadCounts
3.2 years ago
Yijing
• 0
0
votes
6
replies
2.6k
views
How to extract all comparison in DESeq2 LRT test
DESeq2
Likelihood-ratiotest
3.2 years ago
Yijing
• 0
0
votes
13
replies
3.6k
views
DESeq2 design multi factor
DESeq2
design
0substract
nofullrank
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
Laia
▴ 10
0
votes
1
reply
1.1k
views
Error calling GADEM from rGADEM package
rGADEM
updated 2.7 years ago by
mohamedrefaat.1.1992
• 0 • written 3.2 years ago by
Nils.Rother
• 0
0
votes
1
reply
1.0k
views
TxDb conversion of transcript id to gene id
TxDb.Sscrofa.UCSC.susScr11.refGene
TxDb
txi
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Luke
• 0
1
vote
3
replies
1.2k
views
Limma F-statistic identical for different comparison, why?
limma
F-statistic
contrasts
updated 3.2 years ago by
Gordon Smyth
53k • written 3.2 years ago by
jeltje.van.baren
• 0
1
vote
9
replies
2.9k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion
OrgDb
clusterProfiler
3.2 years ago
MK
• 0
1
vote
5
replies
3.0k
views
'combined score' calculation with singscore vs gsva
singscore
GSVA
3.2 years ago
rocanja
▴ 60
0
votes
1
reply
865
views
TOMOseq analysis
DESeq2
tomoda
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
Moutaz
• 0
0
votes
2
replies
1.3k
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
CP
• 0
1
vote
3
replies
4.5k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2
genefilter
3.2 years ago
Morgane
▴ 10
1
vote
0
replies
1.4k
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
3.2 years ago
shepherl
4.2k
3
votes
7
replies
2.9k
views
How to visaulize RNAseq data with edgeR, limma, ...?
r
rnaseq
DifferentialExpression
limma
edger
updated 3.2 years ago by
Gordon Smyth
53k • written 3.2 years ago by
jirkamanuel.petersen
• 0
0
votes
0
replies
1.0k
views
Job:
Academic position in Non-clinical Biostatistics
JobPosting
StatisticalMethod
3.2 years ago
Laurent Gatto
1.6k
0
votes
0
replies
714
views
ConsensusClusterPlus and Scaled Data
ConsensusClusterPlus
3.2 years ago
William
• 0
1
vote
4
replies
1.3k
views
Paired analysis model
DESeq2
3.2 years ago
giulia.lopatriello
• 0
0
votes
2
replies
1.7k
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
3.2 years ago
elefth.pavlos
▴ 40
0
votes
0
replies
1.1k
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
3.2 years ago
Javier
• 0
1
vote
1
reply
1.4k
views
searching study metadata in recount3
recount3
updated 3.2 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
andrew.su
▴ 10
1
vote
0
replies
1.0k
views
Over Representation Analysis using PFAM/InterPro database
PFAM.db
clusterProfiler
3.2 years ago
alexandr.gopanenko
▴ 50
0
votes
0
replies
879
views
TCGAbiolinks GDCprepare produces error in vectbl_as_col_location()
TCGAbiolinks
3.2 years ago
lescano
▴ 10
1
vote
1
reply
1.3k
views
Limit the number of nodes in DESeq2
DESeq2
BiocParallel
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
Sebastian
▴ 10
2
votes
3
replies
1.7k
views
system.file() failed to load .gmt file.
pathwayPCA
Gsea
updated 3.2 years ago by
gabriel.odom
• 0 • written 3.2 years ago by
Mikołaj Mierzejewski
• 0
0
votes
0
replies
944
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
3.2 years ago
m610110001
• 0
0
votes
0
replies
994
views
News:
Bioconductor Carpentries instructor training
teaching
Carpentries
3.2 years ago
Maria Doyle
▴ 110
1
vote
0
replies
1.1k
views
Shotgun metagenomics data analysis
Metagenomics
abundance
3.2 years ago
YASIR
▴ 10
0
votes
0
replies
643
views
How does distance in bins calculated? Can it be replaced with distance in bp?
metagene
metagene2
3.2 years ago
sfpacman
• 0
1
vote
1
reply
858
views
DESeq2 results not correct
Mus_musculus_Data
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Ashish
• 0
0
votes
2
replies
980
views
How to get accession by the name of species
genbank
R
accession
3.2 years ago
wertykus1
• 0
0
votes
6
replies
5.0k
views
limma vs lme4: definition of "random effects"
limma
lme4
mixed
3.2 years ago
leandro
• 0
0
votes
0
replies
963
views
News:
Last day to make commits before Release 3.16
Release
Devel
Bioconductor
release
devel
3.2 years ago
shepherl
4.2k
0
votes
2
replies
2.3k
views
HOMER error: Where is the file?
HOMER
chip-seq
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
兆豪
• 0
2
votes
1
reply
1.1k
views
Different sequencing depth between replicates and samples
DESeq2
edgeR
DiffBind
updated 3.2 years ago by
Gordon Smyth
53k • written 3.2 years ago by
cesar.arenasmena
▴ 10
0
votes
3
replies
975
views
limma manual typo
limma
updated 3.2 years ago by
Gordon Smyth
53k • written 3.2 years ago by
jeltje.van.baren
• 0
46,710 results • Page
72 of 935
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Aleena_Ensembl
▴ 30
Popular Question
to
Hervé Pagès
16k
Teacher
to
Michael Love
43k
Popular Question
to
lianov
• 0
Locations
• All
The city by the bay,
5 minutes ago
WEHI, Melbourne, Australia,
7 minutes ago
Barcelona, Spain,
1 hour ago
Denmark,
2 hours ago
United States,
2 hours ago
Traffic: 1378 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6