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40
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NEED FOR NESSASORY HELP
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Gene-by-sample covariates in limma
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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Once again a "Model matrix not full rank"
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flowStats for CyTOF
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2
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
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101
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Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
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3
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Store output of matchPWM()
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Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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DiffBind ChIPSeqData DESeq2
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Timecourse RNASeq analysis
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3
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get BM error
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8 days ago Dario Strbenac ★ 1.5k
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updated 8 days ago by 41k • written 8 days ago by ▴ 20
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8 days ago • updated 6 days ago winwater0928 • 0
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updated 9 days ago by 41k • written 9 days ago by ▴ 40
1
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161
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Citation for edgeR user guide
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7
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News: List of Deprecated Packages for Bioc3.19
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9 weeks ago • updated 9 days ago shepherl 3.9k
45,611 results • Page 1 of 913
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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