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tamia.schmeler788
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msmsTests, inconsistent sign between lFC.Av and LogFC
msmsTests
Proteomics
20 hours ago
Ben
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0
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3
replies
1.4k
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ChAMP trouble reading csv file
ChAMP
written 2.5 years ago by
Keasiykan
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0
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0
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33
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bcftools norm Equivalent
Rsamtools
3 days ago
Dario Strbenac
★ 1.6k
0
votes
1
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99
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Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
written 9 days ago by
Xenia
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0
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1
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108
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Questions about bacon QC and correction on EWAS results
bacon
17 days ago
sup0903
• 0
0
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1
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130
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Development of MSstat workflow to analyze DIA time series data
MSstats
updated 17 days ago by
Gordon Smyth
53k • written 17 days ago by
sithurandi
• 0
0
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0
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217
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MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
17 days ago
srkingwu
• 0
0
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0
replies
82
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Junction CPM via Snapcount and Recount3
snapcount
recount3
18 days ago
henry.tietz
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0
votes
1
reply
113
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How to convert .raw data for use in xcms
xcms
written 18 days ago by
Monica
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0
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11
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Spam:
Is there a way to map Excel fields to VCF contacts for accurate conversion?
ComputationalChemistry
Technology
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Website
updated 24 days ago by
shepherl
4.3k • written 24 days ago by
witebir963
0
2
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3
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499
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Guitar R package requires update due to dependency GenomicFeatures
GenomicFeatures
Guitar
txdbmaker
GenomicRanges
written 4 weeks ago by
ferran.llobet.cabau
▴ 10
0
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5
replies
3.0k
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Ensembl site unresponsive via biomaRt
biomaRt
written 10 months ago by
hebda
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0
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14
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Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
8 weeks ago
Maya
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9
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Spam:
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TOAST
8 weeks ago
Maya
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Maya
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Maya
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Spam:
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ScreenR
8 weeks ago
Maya
0
0
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211
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PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
written 9 weeks ago by
bolusharris
• 0
0
votes
3
replies
342
views
DECIPHER DesignProbes unable to design FISH-probes
decipher
FISH
DECIPHER
FISH-probe
probe-design
written 9 weeks ago by
vreinmuth
• 0
3
votes
5
replies
576
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upstream git branches of bioc-release
Bioconductor
written 9 weeks ago by
Jeroen
▴ 10
0
votes
1
reply
443
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org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4
org.Ss.eg.db
AnnotationDbi
written 5 months ago by
Adam Munhall
• 0
0
votes
1
reply
344
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GOseq Probability Weight Function bad fit
goseq
written 4 months ago by
francesca
• 0
0
votes
2
replies
186
views
APAlyzer
APAlyzer
updated 10 weeks ago by
Kevin Blighe
★ 4.0k • written 10 weeks ago by
anjanaram1
▴ 10
0
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1
reply
2.0k
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Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
updated 10 weeks ago by
Stefano Mangiola
▴ 40 • written 5.1 years ago by
Chantel
• 0
0
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0
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7
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Spam:
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COSMIC.67
4 months ago
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6
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Spam:
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COSMIC.67
5 months ago
paseje6172
0
0
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0
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323
views
Y-axis break ihn Volcano Plot
EnhancedVolcano
Y-axis_break
Volcano_Plot
7 months ago
rajdeepboral00
• 0
0
votes
0
replies
306
views
getQC(RGset.raw) from IlluminaHumanMethylationMSAmanifest
getQC
hcg110.db
updated 7 months ago by
shepherl
4.3k • written 7 months ago by
zwang072005
• 0
0
votes
0
replies
291
views
DiffBind plot.profile error
BiocParallel
DiffBind
8 months ago
this_is_me_trying
• 0
0
votes
1
reply
692
views
Using EBI Image on Ranged Bar Chart
EBImage
written 8 months ago by
ekatcher
• 0
1
vote
3
replies
1.3k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
8 months ago
Konstantinos Yeles
▴ 90
0
votes
2
replies
628
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 5 months ago by
Liona
• 0 • written 8 months ago by
Maria Doyle
▴ 110
0
votes
0
replies
337
views
Blank gene_id in featureCounts
featureCounts
Rsubread
8 months ago
Meg
• 0
0
votes
1
reply
593
views
FCS 32 support going backwards?
flowCore
updated 8 months ago by
shosioness123q
• 0 • written 8 months ago by
Oliver
• 0
0
votes
0
replies
392
views
What Input-type do I use in decouplR::run_viper?
decoupleR
viper
updated 8 months ago by
Michael Love
43k • written 8 months ago by
Julian
• 0
0
votes
0
replies
366
views
Combining COMBAT-seq result (raw count) with other raw count
rnaseq
combat-seq
sva
combat
bulk-rnaseq
8 months ago
dudwnsrla1
• 0
0
votes
1
reply
591
views
Can't install BioC packages (and manager) behind firewall
Install
updated 8 months ago by
Marcel Ramos
700 • written 8 months ago by
delphine
• 0
0
votes
0
replies
1.1k
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq
profileplyr
DiffBind
8 months ago
Muhammad
• 0
0
votes
1
reply
820
views
Combat-seq usage
sva
8 months ago
bbao
▴ 10
0
votes
1
reply
458
views
What happened to the Joost2016 dataset
org.Sc.sgd.db
updated 8 months ago by
shepherl
4.3k • written 8 months ago by
clementleong
• 0
0
votes
2
replies
798
views
FlowSOM is unable to create Output
FlowSOM
updated 8 months ago by
EvangelinePope
• 0 • written 9 months ago by
marco.klein1
• 0
0
votes
6
replies
1.9k
views
Discrepancies in normalised count data vs unnormalised
DESeq2
9 months ago • updated 8 months ago
AMgroup
• 0
0
votes
0
replies
512
views
Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma
probe
DMRcate
GenomicRanges
DifferentialMethylation
9 months ago
jamiecatalano2
• 0
0
votes
0
replies
450
views
Batch correction for microarray
BatchEffect
sva
MicroarrayData
9 months ago
Shaimaa Gamal
• 0
0
votes
0
replies
244
views
GRaNIE with no internet
GRaNIE
9 months ago
maia.malonzo
• 0
0
votes
0
replies
288
views
Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
9 months ago
Javier
• 0
0
votes
0
replies
420
views
I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap
mergingpeaks
ChIPseq
DiffBind
9 months ago
atlanta
• 0
1
vote
1
reply
1.4k
views
Differential expression analysis using two TCGA datasets
DifferentialExpression
TCGAbiolinks
RNASeq
updated 9 months ago by
ATpoint
★ 5.0k • written 9 months ago by
Shaimaa Gamal
• 0
1
vote
0
replies
583
views
Modelling gene program dynamics across time with {lemur}
lemur
9 months ago
BiotechPedro
▴ 10
1,000 results • Page
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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