0
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0
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35
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Question about collapsing ASVs by genus level during DESeq2 analysis
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4 days ago acharyapratiksha24 • 0
0
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38
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What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
9 days ago Matthew Thornton ▴ 380
1
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119
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incomplete imputation of missing values with LEA impute() function
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11 days ago • updated 10 days ago nadia • 0
0
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1
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162
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Streamlining the computing time for MiloDE p-value correction in large dataset?
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updated 8 days ago by ★ 5.0k • written 12 days ago by • 0
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Bioconductor
updated 11 days ago by 68k • written 12 days ago by • 0
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0
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70
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gene Set with high AUC score but no cells assigned to cell type
AUCell
19 days ago gogeni5529 • 0
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0
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77
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19 days ago francesca • 0
0
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0
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125
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23 days ago piffelpaff • 0
0
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1
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92
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Problem with viewGO(ref_path) in SpliceWiz
Bioconductor SpliceWiz
23 days ago • updated 19 days ago jalte.jelsing • 0
0
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0
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48
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Problem with the TMB plot
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23 days ago nayanajose • 0
0
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0
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92
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After running samtools, the featureCounts command crashed.
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updated 2 days ago by 43k • written 25 days ago by • 0
0
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25 days ago Best Rehab Center 0
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0
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62
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A problem occurs when running the monocle2
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27 days ago yuheng_yang • 0
0
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0
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86
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0
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2
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170
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4 weeks ago gogeni5529 • 0
0
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0
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109
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0
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Length of 'dimnames' [1] not equal to array extent
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0
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10
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Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
DESeq2 scRNAseq
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0
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2
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0
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226
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4 months ago this_is_me_trying • 0
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4 months ago Konstantinos Yeles ▴ 90
0
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2
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496
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4 months ago Meg • 0
0
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1
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491
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FCS 32 support going backwards?
flowCore
updated 4 months ago by • 0 • written 4 months ago by • 0
0
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0
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decoupleR viper
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0
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0
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4 months ago dudwnsrla1 • 0
0
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458
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0
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
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5 months ago Muhammad • 0
0
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1
reply
631
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Combat-seq usage
sva
5 months ago • updated 4 months ago bbao ▴ 10
1,000 results • Page 1 of 20
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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