0
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0
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3
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Correlation between gene clusters
genomes RNASeqData
31 minutes ago Le • 0
0
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0
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35
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Error ("could not find function "EM_estimate"") when running ENmix mpreprocess() on Microsoft Azure
Preprocessing ENmix
1 day ago balf0020 • 0
0
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1
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297
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ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 10 days ago by • 0 • written 18 days ago by • 0
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141
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Errors running learn.bn function from Pigengene in windows environment
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written 23 days ago by • 0
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0
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10
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Spam: Best Hotels In Maui
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25 days ago 2zrcj3448p 0
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7
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724
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DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMean, L2FC, ...
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updated 25 days ago by • 0 • written 27 days ago by • 0
0
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0
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99
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Confidence interval contains 0 but p<0.05
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4 weeks ago Adelyn • 0
0
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0
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96
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4 weeks ago Edward • 0
1
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4
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355
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pathview - multiple states
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4 weeks ago Philippine • 0
0
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5
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364
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fail to use addPerROIQC in Rmd
stand standR
updated 4 weeks ago by • 0 • written 4 weeks ago by • 0
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5
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403
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how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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4 weeks ago • updated 16 days ago xiaofeiwang198266 • 0
0
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1
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181
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rrvgo::calculateSimMatrix() error
rrvgo
updated 4 weeks ago by • 0 • written 5 weeks ago by • 0
0
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0
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128
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
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5 weeks ago David R ▴ 90
0
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1
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167
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WGCNA with TPM tables
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updated 6 weeks ago by ★ 4.6k • written 6 weeks ago by • 0
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1
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152
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eRNAs count
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updated 6 weeks ago by ★ 4.6k • written 6 weeks ago by • 0
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WGCNA module preservation using only adjacency matrix
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7 weeks ago yang1641 • 0
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ChemmineOB avaiable for macOS Binary (arm64)?
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7 weeks ago Simone • 0
0
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2
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364
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installation error for BiocNeighbors package
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7 weeks ago 育 • 0
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0
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Errors trying to load EPIC v2 data in ChAMP
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7 weeks ago elgomez • 0
1
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3
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449
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makeContrastsDream for Interaction
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8 weeks ago • updated 5 weeks ago abadgerw • 0
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Merge Replicates vs Mixed Model
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Diffbind: Cut&Run: E-coli spike-in
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0
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Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes RNASeq
8 weeks ago brayas13 • 0
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0
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export processed data from flowploidy
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9 weeks ago Zdenek Skala • 0
0
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0
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Filtering Steps for proActiv Analysis
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9 weeks ago LuciaNhu • 0
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0
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diffbind covariates
DiffBind ATACSeq
updated 10 weeks ago by 43k • written 10 weeks ago by ▴ 220
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MOFA2: Confidence Intervals // Unvertainty estimates for MOFA model
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10 weeks ago mario_de_manner • 0
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cbind for multiple SpatialExperiment takes so much time
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10 weeks ago Ibrahim • 0
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DiffBind subset replicates
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11 weeks ago Haiping • 0
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11 weeks ago thomas.heigl.ibk • 0
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when FOLD>0, which group of sampls increased?
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12 weeks ago Jeffcgen2000 • 0
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0
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Paired splsda
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12 weeks ago michelafrancesconi8 • 0
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12 weeks ago Young Boqin • 0
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[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
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12 weeks ago Anke • 0
1
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1
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374
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WGCNA
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3 months ago Marco • 0
1
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1
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269
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updated 3 months ago by ★ 4.6k • written 3 months ago by • 0
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630
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Convert HGVS Representation back to Reference Genome Coordinates
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updated 3 months ago by ▴ 160 • written 3 months ago by ★ 1.5k
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3 months ago tim.meese • 0
0
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312
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BiomaRt - improved access to Ensembl ?
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updated 3 months ago by ★ 6.6k • written 3 months ago by • 0
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189
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Deprecated Gates- tailgate
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3 months ago ztflaten • 0
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0
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Getting error while running GenomicPlot
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3 months ago Lucky • 0
0
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0
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WGCNA: Problem with selecting soft threshold
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3 months ago Fernanda • 0
0
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0
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package rpx, unable to download any dataset (PRIDE, MassIVE, iProX)
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3 months ago Jane_Huang • 0
0
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0
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Generating Boxplots for Gene Expression by CellType in NanoStringGeoMXSet
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3 months ago Cinque • 0
1,000 results • Page 1 of 20
Recent ...
Replies
Comment: EuroBioC2023 abstract submission closing soon! by Jeremy • 0
Thanks for the reminder! If you're a Bioconductor user or developer, make sure to [tabs][1] submit your abstract by the deadline, Monday, A…
Comment: Mean variance curve troubleshoot filtering by gingergeiger22 • 0
Gordon, thank for your response. 'filterByExpr()' was marginally better. I can see high variability in samples within the groups from the M…
Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20
Since I don't know which organism you are working on, I would recommend using the following: `-s 0` if library is unstranded `-C` Discard…
Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20
Yes use this option. It is recommended for PE and if you don't use it you will observe nearly twice the number of counts in your results. H…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…
Votes
Comment: Comparing different method for DESEQ2
Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
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