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277
views
Minimum datasets needed for meta analysis
RnaSeqSampleSize
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
Durga
▴ 10
1
vote
1
reply
417
views
DEXSeq DEXSeqDataSet count matrix duplication
DEXSeq
DRIMSeq
DEXSeqDataSet
columnduplication
6 months ago
NiKo
▴ 10
1
vote
0
replies
462
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
6 months ago
yujin
▴ 10
1
vote
4
replies
1.1k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview
KEGG
Oryza_sativa
11 months ago
Jiyoung Lee
• 0
1
vote
0
replies
251
views
Attempting to import SBML file using R
SBMLR
sbml
rsbm
rsbml
updated 5 months ago by
Michael Love
42k • written 5 months ago by
isasg
▴ 10
1
vote
3
replies
1.6k
views
regionCounts() from csaw - object 'fancy_mseq' not found
ATACSeq
regionCounts
csaw
updated 5 months ago by
dineika.chandrananda
• 0 • written 2.0 years ago by
zgraytho88
• 0
1
vote
4
replies
508
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
3 months ago
mikat
• 0
1
vote
1
reply
479
views
Rbowtie2 problem
Rbowtie2
updated 4 months ago by
Dilara
• 0 • written 23 months ago by
Francisco
▴ 10
1
vote
3
replies
291
views
miRTarRnaseq library
miRNATarget
mirTarRnaSeq
updated 7 weeks ago by
mercedeh.movassagh
▴ 10 • written 8 weeks ago by
María
• 0
1
vote
2
replies
688
views
Error running run_app('LFQ')
LFQ
DEPpackage
run_app('LFQ')
ShinyApps
DEP
updated 10 months ago by
Ram
▴ 210 • written 11 months ago by
d.kozhevnikova
▴ 10
1
vote
2
replies
700
views
Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData
WGCNA
consensusnetworks
5 months ago • updated 4 months ago
Levi
• 0
1
vote
0
replies
189
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k
MethylationArray
TCGAbiolinks
Tcga
TCGAbiolinksGUI.data
11 weeks ago
BioinfoMug
• 0
1
vote
1
reply
248
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 3 months ago by
Robin
• 0 • written 3 months ago by
Pez
▴ 10
1
vote
2
replies
243
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
5 days ago • updated 3 days ago
BioinfGuru
▴ 30
1
vote
5
replies
883
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 10 months ago by
Alejandro Reyes
★ 1.9k • written 10 months ago by
zhangpeng1202
• 0
1
vote
1
reply
425
views
How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
WGCNA
updated 6 months ago by
tangming2005
▴ 190 • written 6 months ago by
meenae
▴ 10
1
vote
1
reply
1.1k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 4 months ago by
mohamad.hajo89
• 0 • written 2.4 years ago by
ikotlar
▴ 10
1
vote
0
replies
492
views
WGCNA of two different cohorts study
DifferentialExpression
WGCNA
updated 11 months ago by
Michael Love
42k • written 11 months ago by
suphamon.j
▴ 20
1
vote
2
replies
824
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 12 months ago by
Yijing
• 0
1
vote
2
replies
352
views
Inconsistent results in DiffBind
DiffBind
5 months ago
Sam
▴ 10
0
votes
1
reply
289
views
DESeq Design for Time-Series Analysis
RNASeq
DESeq2
timecourse
4 months ago
WS
• 0
0
votes
0
replies
365
views
adding noise to scRNA Seq counts
scRNAseq
10 months ago
Jiyuan
• 0
0
votes
3
replies
558
views
Suggested package missing from Development version of Bioconductor
Devel
updated 7 months ago by
shepherl
3.9k • written 7 months ago by
Richard
• 0
0
votes
5
replies
765
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 9 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
0
votes
1
reply
318
views
WGCNA | plotDendroAndColors ERROR
plotDendroAndColor
WGCNA
updated 3 months ago by
ATpoint
★ 4.1k • written 3 months ago by
Priya
• 0
0
votes
3
replies
749
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 10 months ago by
Erik Wright
▴ 150 • written 10 months ago by
Till
▴ 30
0
votes
0
replies
154
views
Postdoc
TCGAWorkflow
3 months ago
sameerahmadguru
• 0
0
votes
0
replies
344
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData
GeneSetEnrichment
multiGSEA
10 months ago
sonal
• 0
0
votes
0
replies
45
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
3 days ago
danalvoronov
▴ 10
0
votes
1
reply
387
views
Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 5 months ago by
shepherl
3.9k • written 5 months ago by
1135296741
• 0
0
votes
0
replies
405
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore
cytoMEM
10 months ago
aguirre
▴ 20
0
votes
0
replies
80
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
9 days ago
neilzhao
▴ 30
0
votes
0
replies
68
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
3 days ago
Anton01
• 0
0
votes
3
replies
1.3k
views
pathview error "negative length vectors are not allowed
pathview
kegg
KEGG
updated 7 months ago by
Benji Bromberg
▴ 20 • written 8 months ago by
Mauricio Diego
• 0
0
votes
0
replies
50
views
determine k during RUVSeq
RUVSeq
RUVnormalize
3 days ago
Ειρήνη
• 0
0
votes
0
replies
13
views
Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
10 months ago
roma
0
0
votes
0
replies
180
views
GDC slides download
TCGAbiolinks
3 months ago
jain72744
• 0
0
votes
2
replies
103
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
6 days ago • updated 5 days ago
Yveto
• 0
0
votes
0
replies
448
views
Positive beta-scores of essential genes in drug-treated cells
mageck
MAGeCKFlute
CrisprScreen
11 months ago
Monika
• 0
0
votes
0
replies
117
views
flowDensity on a flowset
flowDensity
6 weeks ago
fredrikwallberg
• 0
0
votes
0
replies
183
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag
SplicedAlignment
SGSeq
minimap2
11 weeks ago
jk
• 0
0
votes
0
replies
285
views
Gene names not included on KEGGgraph plots
KEGGgraph
11 months ago
hilarius_bookbinder
• 0
0
votes
0
replies
445
views
Help with error running DiffBind
DiffBind
11 months ago
Chris
▴ 10
0
votes
1
reply
1.1k
views
WGCNA Preservation error
preservation
WGCNA
updated 3 months ago by
Gail
• 0 • written 2.4 years ago by
Sara
• 0
0
votes
0
replies
13
views
Spam:
ost to pst migration software
mgu74bv2cdf
NewWave
hgu133a2.db
10 months ago
roma
0
0
votes
4
replies
592
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO
ensembldb
7 months ago • updated 6 months ago
Rockbar
• 0
0
votes
1
reply
326
views
HTSeqGenie runs very slow
HTSeqGenie
7 months ago
zh9118
• 0
0
votes
0
replies
303
views
Subsite info is possible for more studies
curatedMetagenomicData
11 months ago
Vitor Heidrich
• 0
0
votes
0
replies
262
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
5 months ago
Joshua
• 0
0
votes
2
replies
1.7k
views
ChAMP pipeline error (champ.import)
software error
written 5.1 years ago by
mhebba
• 0
402 results • Page
2 of 9
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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