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14 days ago • updated 11 days ago
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Answer: Counter-directional LFC shrinkage
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It's not just the average count but also the dispersion that affects apeglm.
You can try ashr for another type of shrinkage.
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Thank you for your answer!
The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…
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Ali Osman
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Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…
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Two years on and the issue is still there. Thank you Arthur for the solution!
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