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1
vote
7
replies
1.1k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.3 years ago
stephen.pollo
• 0
4
votes
7
replies
2.1k
views
How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
16 months ago • updated 15 months ago
Bernardo
▴ 10
2
votes
7
replies
1.4k
views
package instalation
Clinical
2.2 years ago
dartehyaw
• 0
0
votes
7
replies
435
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
6 weeks ago
needNGS
• 0
1
vote
7
replies
1.6k
views
RUVseq, DESeq2, and different codesets for nanostring data
RUVSeq
DESeq2
updated 23 months ago by
Michael Love
42k • written 23 months ago by
xiaofeiwang18266
▴ 50
1
vote
7
replies
1.6k
views
Generating Venn Diagram
ggvenn
updated 2.1 years ago by
Basti
▴ 780 • written 2.1 years ago by
axe880
• 0
1
vote
7
replies
1.7k
views
segmentation faults flowMeans and flowStats
flowstats
flow cytometry
7.5 years ago
frederiekmaarten.kerckhof
▴ 10
0
votes
7
replies
1.2k
views
How to change the size of yaxis in motifstack
motifstack
plotMotifLogoStack
4.8 years ago
saadmurtazakhan
▴ 10
1
vote
7
replies
1.4k
views
TSSEscore function in ATACseqQC package
ATACseqQC
2.3 years ago
Liu Yu-Yu
• 0
0
votes
7
replies
1.7k
views
Cannot call biomaRt library.
installationofbioconductor
biomaRt
3.4 years ago
dolivenca3
• 0
0
votes
7
replies
1.6k
views
RUVSeq package for adjusting two variables of interest
RemoveUnwantedVariation
RNA-sequencing
RUVSeq
updated 3.3 years ago by
davide risso
▴ 950 • written 3.3 years ago by
Luca
• 0
2
votes
7
replies
360
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
9 days ago • updated 6 days ago
sajadahmad41454
• 0
2
votes
7
replies
1.5k
views
Error when installing Rgraphviz on Centos
Rgraphviz
Installation Error
4.6 years ago
jmh5ad
▴ 40
0
votes
7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
3.3 years ago • updated 3.2 years ago
michael.s
• 0
1
vote
7
replies
2.6k
views
bplapply() fails when BPPARAM = SnowParam() is specified
biocparallel
9.5 years ago
jessica.hekman
▴ 40
0
votes
7
replies
689
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
486342583
• 0
0
votes
7
replies
1.4k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error
iPath
R
compilation
2.4 years ago • updated 2.3 years ago
wjb2130
• 0
0
votes
7
replies
1.8k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC
ATAC
ATACseq
software error
Tutorial
updated 4.9 years ago by
Steve Lianoglou
★ 13k • written 4.9 years ago by
mbasam
• 0
1
vote
7
replies
4.5k
views
installation of package ‘GenomeInfoDbData’ had non-zero exit status
GenomeInfoDbData
"GenomeInfoDbData"package
updated 2.2 years ago by
Hervé Pagès
16k • written 3.5 years ago by
N.D.Hubot
• 0
0
votes
7
replies
1.6k
views
Best way to subset one IRanges by list of IRanges
iranges
4.6 years ago
Robert M. Flight
▴ 280
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio
rnbeads
rversion3.2.2
8.4 years ago
areyoujokingme
• 0
0
votes
6
replies
1.8k
views
Gviz/Biostrings memory issue?
gviz
biostrings
7.5 years ago
stianlagstad
▴ 90
0
votes
6
replies
1.5k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
zebasilio
• 0
3
votes
6
replies
1.9k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
Nitesh Kumar Singh
▴ 30
0
votes
6
replies
1.4k
views
Error in zlm function model matrix
MAST
6.0 years ago
jka8119
▴ 10
0
votes
6
replies
4.6k
views
Nonexistent include directory
software error
r package problem
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
kkp7700
• 0
0
votes
6
replies
1.4k
views
cannot upload csv files in DEBrowser
debrowser
updated 3.1 years ago by
adaoka4
• 0 • written 4.6 years ago by
15040356701
• 0
0
votes
6
replies
1.1k
views
Problems loading latest Version of S4Vectors
affy
3.7 years ago
ianrector97
• 0
2
votes
6
replies
1.3k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.2 years ago
robmaz77
▴ 20
0
votes
6
replies
3.9k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R
differential expression
rnaseqgene
8.6 years ago
JunLVI
▴ 40
3
votes
6
replies
305
views
Surrogate variable analysis for paired RNA seq experiment
RUVSeq
sva
5 weeks ago
nhaus
▴ 30
2
votes
6
replies
459
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
5 weeks ago
Chris
▴ 10
1
vote
6
replies
1.6k
views
Running FlowSOM in R problem
FlowSOM
updated 3.5 years ago by
sofie.vangassen
▴ 10 • written 3.5 years ago by
Václav
• 0
0
votes
6
replies
1.4k
views
Overlapping genes between gene modules in WGCNA
WGCNA
4.3 years ago
shresthavivek18
• 0
2
votes
6
replies
2.0k
views
rtracklayer: error in importing bigwig file in r in windows
rtracklayer
bigwig file
updated 2.6 years ago by
Leonardo Collado Torres
★ 1.0k • written 4.2 years ago by
mzwanelen
▴ 10
0
votes
6
replies
6.7k
views
Bioconductor 3.0 and old versions with R 3.2.0
package updates
9.0 years ago
Cataphractus
• 0
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.8 years ago by
Mengfei
• 0 • written 3.0 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
6
replies
932
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.2 years ago
sergio.espeso-gil
• 0
1
vote
6
replies
2.4k
views
biomaRt not working anymore
biomart
annotation
7.7 years ago
ldetorrente
▴ 10
0
votes
6
replies
1.4k
views
DEXSeq error with estimateExonFoldChanges
software error
dexseq
R
6.7 years ago
Chen
• 0
1
vote
6
replies
1.4k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
5.2 years ago
ngs06
▴ 20
0
votes
6
replies
1.9k
views
DEXSeq Error in FUN(X[[i]], ...) : subscript out of bounds not sure why
dexseq
7.1 years ago
badribio
• 0
0
votes
6
replies
1.8k
views
ERROR: cannot finish the BAM file. Please check the disk space in the output directory.
Rsubread
updated 3.1 years ago by
Wei Shi
★ 3.6k • written 3.2 years ago by
Mehrad
• 0
0
votes
6
replies
957
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS
flowCore
updated 5 months ago by
SamGG
▴ 350 • written 5 months ago by
das.traveller
• 0
0
votes
6
replies
785
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 9 weeks ago by
qianyi13
• 0 • written 12 weeks ago by
Pavel
• 0
0
votes
6
replies
726
views
fastMNN reproducibility across machines when using Docker
batchelor
10 months ago
nils.eling
• 0
0
votes
6
replies
999
views
affyPara build error
affyPara
2.2 years ago
starsareintherose
• 0
0
votes
6
replies
1.7k
views
How can I improve somatic/germline status prediction without matched normal (PureCN)?
purecn
5.9 years ago
skkujin
• 0
0
votes
6
replies
1.1k
views
BiocParallel with drake hangs
BiocParallel
4.2 years ago
biomiha
▴ 20
4
votes
6
replies
1.6k
views
HTSeq command option for single-end reads
HTSeqGenie
21 months ago
Maryam.sed1400
• 0
1,000 results • Page
3 of 20
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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