0
votes
0
replies
489
views
Differential Gene Wrapper for Propotion of Detected
scran
18 months ago Dario Strbenac ★ 1.6k
0
votes
9
replies
1.5k
views
Research Project - Expanding search funtionality on the GEO database
GEOquery GEO
18 months ago gallantk5 • 0
0
votes
0
replies
578
views
Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
18 months ago Tanvi • 0
0
votes
0
replies
798
views
ligand-receptor-interactions for bulk RNAseq in R
decoupleR
18 months ago silvaesilva.da • 0
0
votes
0
replies
641
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
18 months ago Reese • 0
0
votes
0
replies
486
views
Scoreplot for OPLS
splots
18 months ago devarti.mahakalkar • 0
0
votes
4
replies
1.3k
views
Single Cell Experiment : Differential Expression "List of length 0" - Help!
DifferentialExpression scran scater SingleCellExperiment edgeR
18 months ago vohara4 • 0
0
votes
0
replies
521
views
Error in drawHeatmap function
GeneOverlap heatmaps
18 months ago Johanna • 0
1
vote
4
replies
1.6k
views
error loading collectTRI regulon
decoupleR OmnipathR
18 months ago silvaesilva.da • 0
0
votes
4
replies
2.4k
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData EPICv2 EPICv1
updated 6 months ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
831
views
When I tried to use the functions from the celldex package to fetch information, I encountered the following error. How can I resolve this?"
celldex SingleR
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
0
votes
0
replies
489
views
Amplican doesn't recognize forward reads fast q file
amplican
18 months ago landenshanie ▴ 40
0
votes
3
replies
909
views
STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 18 months ago by ▴ 110 • written 19 months ago by • 0
1
vote
3
replies
964
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 18 months ago by ▴ 110 • written 19 months ago by • 0
0
votes
0
replies
442
views
does TMixClust recognise biological replicates
TMixClust
19 months ago ta_awwad ▴ 10
0
votes
0
replies
867
views
How to fix fix $PnR in flowCore
flowCore
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
0
replies
472
views
Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
0
replies
526
views
EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
19 months ago Maria Doyle ▴ 110
0
votes
0
replies
456
views
Message 'invalid data format' on impute.MAR function
impute
19 months ago marcosdossantosferreira • 0
0
votes
1
reply
1.3k
views
scds creates sparse->dense coercion
scds
19 months ago • updated 17 months ago Lluís Revilla Sancho ▴ 760
0
votes
0
replies
409
views
Import_picrust2 question
microbiomeMarker
19 months ago Jay • 0
0
votes
0
replies
482
views
gmapR source package contains x86_64 binaries
gmapR
19 months ago Tom Lin • 0
1
vote
2
replies
988
views
conumee with Infinium MethylationEPIC v2.0
conumee
written 19 months ago by ▴ 10
1
vote
9
replies
2.0k
views
Cannot install oligo on Fedora
oligo source Install
19 months ago • updated 18 months ago Guido Hooiveld ★ 4.1k
0
votes
6
replies
2.2k
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq Rsubread
19 months ago atan • 0
0
votes
1
reply
860
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
19 months ago • updated 18 months ago abhisek001 • 0
0
votes
0
replies
419
views
Conditional analysis
GENESIS
19 months ago SuperDad • 0
0
votes
0
replies
1.1k
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
19 months ago Raghad • 0
0
votes
0
replies
12
views
Spam: Understanding Laser Hair Removal?
healthyControlsPresenceChecker
19 months ago shahrozimmac 0
0
votes
0
replies
456
views
Processing of curatedmetagenomics
curatedMetagenomicData
19 months ago Edward • 0
0
votes
0
replies
666
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq scRNAseq
19 months ago Bibi • 0
0
votes
0
replies
585
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
19 months ago Abiologist • 0
0
votes
3
replies
1.5k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 19 months ago by ▴ 110 • written 19 months ago by • 0
0
votes
0
replies
558
views
determine k during RUVSeq
RUVSeq RUVnormalize
19 months ago Ειρήνη • 0
0
votes
1
reply
753
views
ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
updated 15 months ago by ▴ 20 • written 19 months ago by • 0
0
votes
0
replies
16
views
Spam: Unveiling Unmatched Best Custom Patches
SIMAT
19 months ago oliverelijhan 0
0
votes
0
replies
561
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
19 months ago Anton01 • 0
0
votes
0
replies
528
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO KEGG gage pathview
19 months ago danalvoronov ▴ 10
0
votes
0
replies
549
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq WGCNA
19 months ago k200987 • 0
0
votes
0
replies
538
views
Difference in Contrast in DiffBind
DiffBind
19 months ago user_bioinfo • 0
1
vote
2
replies
677
views
QSEA- Extraction of Normalized methylation across the samples
qsea ngsReports correlation
written 19 months ago by ▴ 10
1
vote
2
replies
1.2k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
19 months ago BioinfGuru ▴ 70
0
votes
2
replies
687
views
Problem finding certain variables when importing a public database GSE73103
GSEABase GenomicDistributionsData
19 months ago Yveto • 0
0
votes
7
replies
2.1k
views
ChAMP installation issue
Cha ChAMP
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
0
replies
368
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer ShinyApps
19 months ago neilzhao ▴ 30
2
votes
7
replies
2.0k
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
19 months ago sajadahmad41454 • 0
0
votes
0
replies
386
views
Treeio as.treedata function seq lenght error
treeio
19 months ago nromerov • 0
0
votes
0
replies
536
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
20 months ago Dinesh • 0
0
votes
1
reply
1.1k
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 13 months ago by • 0 • written 20 months ago by ▴ 10
0
votes
0
replies
426
views
flowStats for CyTOF
flowStats
20 months ago tholmes • 0
1,000 results • Page 5 of 20
Recent ...
Replies
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Locations • All
WEHI, Melbourne, Australia, 21 minutes ago
Ireland, 38 minutes ago
United States, 43 minutes ago
United States, 2 hours ago
United States, 3 hours ago
Traffic: 814 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6