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193
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4 months ago frueher • 0
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4 months ago bd2000 ▴ 30
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4 months ago Vincent J. Carey, Jr. 6.7k
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Conversion of .sf to .rgel format for the salmon processed files with transcript to gene mapping.
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updated 4 months ago by ★ 4.1k • written 4 months ago by • 0
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Access genes associated with GO terms for a topGO object created with gene2GO
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4 months ago Dan • 0
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4 months ago Simon • 0
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4 months ago inna.gur • 0
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updated 5 months ago by 65k • written 5 months ago by • 0
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3
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Statistical test
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updated 4 months ago by 50k • written 5 months ago by • 0
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flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
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DiffBind getting Fold values of near 0
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updated 5 months ago by ★ 4.1k • written 5 months ago by • 0
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updated 5 months ago by 3.9k • written 5 months ago by • 0
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updated 5 months ago by ▴ 780 • written 5 months ago by ▴ 10
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6 months ago vasily.dobrovolsky • 0
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Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
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updated 6 months ago by 50k • written 6 months ago by • 0
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6 months ago mikkel.byrdal • 0
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6 months ago jared.andrews07 ▴ 30
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accesing gene name RNAseq
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6 months ago agus_rizzo • 0
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COTAN mantainance
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updated 6 months ago by 3.9k • written 6 months ago by • 0
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Version map cannot be validated - not mapping to new bioconductor website
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6 months ago Alexander • 0
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updated 6 months ago by 65k • written 6 months ago by • 0
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updated 6 months ago by ★ 1.3k • written 6 months ago by • 0
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combat output NaN
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6 months ago maxixian1990 • 0
1,000 results • Page 4 of 20
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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