Showing : DMRcate • reset
8
votes
7
replies
1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 4 months ago by ▴ 30
6
votes
12
replies
1.7k
views
Error when loading DMRcate
DMRcate
14 months ago Bazingastats • 0
4
votes
9
replies
3.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 2.5 years ago by ▴ 30 • written 3.9 years ago by ▴ 10
3
votes
4
replies
832
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 10
3
votes
2
replies
261
views
Question about DMRcate
DMRcate dmrcate
3 months ago • updated 12 weeks ago chuanjiao6 • 0
3
votes
4
replies
1.0k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.6 years ago by ▴ 170 • written 3.6 years ago by ▴ 10
2
votes
2
replies
1.6k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 8.4 years ago by ▴ 170 • written 8.4 years ago by • 0
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 170 • written 12 months ago by • 0
2
votes
18
replies
4.9k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.8 years ago by • 0 • written 7.9 years ago by ▴ 160
2
votes
6
replies
1.8k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.0 years ago by ▴ 170 • written 6.0 years ago by • 0
2
votes
6
replies
1.7k
views
DMRcate
DMRcate R DMRcatedata Markdown
14 months ago yr542 • 0
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 8.4 years ago by ▴ 170 • written 8.4 years ago by ▴ 160
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 23 days ago by ▴ 170 • written 5 months ago by ▴ 10
1
vote
2
replies
1.1k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by ▴ 10
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
1
vote
8
replies
1.8k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 3.9 years ago by ▴ 170 • written 3.9 years ago by ▴ 40
1
vote
2
replies
1.5k
views
DMRcate extractRanges error
DMRcate
3.2 years ago • updated 3.1 years ago macsue.jacques ▴ 10
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by ▴ 160
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 10
1
vote
1
reply
1.4k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 8.7 years ago by ▴ 370 • written 8.7 years ago by • 0
1
vote
2
replies
935
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 3 days ago by ▴ 170 • written 14 months ago by ▴ 10
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by ▴ 170 • written 7.1 years ago by ▴ 10
1
vote
2
replies
1.5k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 6.9 years ago by ▴ 170 • written 6.9 years ago by • 0
0
votes
0
replies
621
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
14 months ago gilliangoobie • 0
0
votes
2
replies
475
views
EPIC array hg38 annotation?
minfi DMRcate
11 weeks ago • updated 10 weeks ago mycetes • 0
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by ▴ 120
0
votes
5
replies
2.1k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.4 years ago par.larsson • 0
0
votes
1
reply
973
views
conflicts in chromosome number
DMRcate
updated 7.8 years ago by ▴ 170 • written 7.8 years ago by • 0
0
votes
9
replies
19k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.3 years ago by ▴ 170 • written 7.5 years ago by • 0
0
votes
1
reply
979
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by • 0
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by • 0
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by ▴ 10
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 12 weeks ago by ▴ 170 • written 7.1 years ago by ★ 2.0k
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.8 years ago by ▴ 90 • written 6.9 years ago by • 0
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
5.8 years ago 574233829 • 0
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 4.8 years ago by ▴ 280 • written 4.8 years ago by • 0
0
votes
3
replies
1.3k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.7 years ago by ▴ 170 • written 4.7 years ago by • 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
0
votes
2
replies
789
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.7 years ago zh9118 • 0
0
votes
0
replies
745
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.4 years ago Mike ▴ 10
0
votes
0
replies
79
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
22 days ago Macsue • 0
0
votes
0
replies
127
views
What is the significance of DMR in DMRcate
DMRcate
11 weeks ago chuanjiao6 • 0
0
votes
1
reply
894
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.5 years ago by 65k • written 2.5 years ago by ▴ 30
0
votes
0
replies
826
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.4 years ago Ahdee ▴ 50
0
votes
2
replies
956
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
2.6 years ago xie186 • 0
0
votes
1
reply
730
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 6 months ago by 3.8k • written 6 months ago by • 0
0
votes
5
replies
594
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
0
votes
1
reply
468
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 8 months ago by ▴ 170 • written 8 months ago by • 0
49 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards • All
Popular Question to Leo Lahti ▴ 30
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Locations • All
Melbourne, Australia, 6 minutes ago
INDIA, 38 minutes ago
France, 42 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Finland, 2 hours ago
Traffic: 679 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6