Showing : ExpressionSet • reset
2
votes
5
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4.0k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
8.5 years ago thrabe • 0
6
votes
7
replies
3.8k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
8.6 years ago martin.hoelzer ▴ 20
2
votes
1
reply
3.1k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.7 years ago by ★ 28k • written 8.8 years ago by ▴ 30
1
vote
2
replies
3.1k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 7.6 years ago by 25k • written 7.6 years ago by ★ 4.0k
0
votes
3
replies
2.6k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
8.0 years ago NS ▴ 60
3
votes
10
replies
2.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
9.2 years ago svlachavas ▴ 830
3
votes
2
replies
2.3k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 4.6 years ago by 66k • written 4.6 years ago by ▴ 20
4
votes
8
replies
2.3k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 4.1 years ago by 50k • written 4.1 years ago by • 0
1
vote
3
replies
2.2k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 7.6 years ago by ▴ 830 • written 7.6 years ago by • 0
0
votes
3
replies
2.2k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 22 months ago by 66k • written 22 months ago by • 0
2
votes
4
replies
1.9k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 830
1
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10
replies
1.8k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
7.4 years ago gabor.halasz • 0
3
votes
5
replies
1.6k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by • 0
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 20
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 10
3
votes
9
replies
1.5k
views
How many features an ExpressionSet can contain ?
ExpressionSet
23 months ago OE • 0
1
vote
2
replies
1.4k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 8.2 years ago by 66k • written 8.2 years ago by • 0
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
7.3 years ago andreas.pittroff • 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
7.8 years ago Steffen Neumann ▴ 30
0
votes
1
reply
1.2k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 7.3 years ago by ▴ 830 • written 7.3 years ago by ▴ 20
4
votes
3
replies
1.2k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 6.9 years ago by 66k • written 6.9 years ago by • 0
0
votes
1
reply
1.1k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 7.0 years ago by 66k • written 7.0 years ago by ▴ 60
8
votes
23
replies
1.1k
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment ExpressionSet
updated 5 weeks ago by ★ 3.3k • written 5 weeks ago by ▴ 40
1
vote
1
reply
1.1k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 70
1
vote
1
reply
1.1k
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
8.1 years ago g_draculla ▴ 10
0
votes
2
replies
1.0k
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
4.7 years ago rezashiralmohammad • 0
0
votes
0
replies
993
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
6.2 years ago rf • 0
0
votes
1
reply
979
views
ExpressionSet: Internal Standard
expressionset
updated 8.0 years ago by ★ 13k • written 8.0 years ago by • 0
0
votes
1
reply
937
views
beadarray error conversion
beadarray limma ExpressionSet
updated 7.4 years ago by 50k • written 7.4 years ago by • 0
0
votes
0
replies
869
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.8 years ago jirkanov • 0
5
votes
2
replies
866
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 20
0
votes
0
replies
738
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
5.7 years ago payam_delfani1980 • 0
0
votes
1
reply
700
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 3.5 years ago by 66k • written 3.5 years ago by • 0
0
votes
1
reply
521
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
4.1 years ago aush ▴ 40
1
vote
2
replies
242
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
8 weeks ago Mj.A. • 0
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Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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