updated 10 weeks ago by
James W. MacDonald
65k
•
written 10 weeks ago by
ramonmassoni
▴
10
0
votes
1
reply
216
views
2
votes
1
reply
387
views
updated 4 months ago by
James W. MacDonald
65k
•
written 4 months ago by
sarah
•
0
0
votes
1
reply
444
views
2
votes
3
replies
1.5k
views
updated 7 months ago by
Gordon Smyth
50k
•
written 7 months ago by
gingergeiger22
•
0
2
votes
2
replies
454
views
0
votes
2
replies
909
views
1
vote
4
replies
732
views
updated 10 months ago by
Hervé Pagès
16k
•
written 11 months ago by
Manish
•
0
0
votes
0
replies
436
views
4
votes
8
replies
1.4k
views
0
votes
2
replies
784
views
written 15 months ago by
camilia.savitri
•
0
0
votes
5
replies
1.2k
views
updated 16 months ago by
James W. MacDonald
65k
•
written 16 months ago by
teetee
•
0
0
votes
0
replies
453
views
0
votes
2
replies
1.0k
views
updated 19 months ago by
Michael Love
41k
•
written 19 months ago by
Pratik Mehta
▴
10
0
votes
4
replies
2.0k
views
updated 23 months ago by
Hervé Pagès
16k
•
written 23 months ago by
rsnorman
•
0
5
votes
9
replies
1.6k
views
updated 21 months ago by
Michael Love
41k
•
written 2.1 years ago by
jvandinter
•
0
0
votes
18
replies
3.5k
views
2.2 years ago
rbenel
▴
40
3
votes
3
replies
1.5k
views
updated 24 months ago by
James W. MacDonald
65k
•
written 2.3 years ago by
Mikhail Dozmorov
▴
30
1
vote
2
replies
1.2k
views
2
votes
3
replies
2.5k
views
updated 2.4 years ago by
Hervé Pagès
16k
•
written 2.4 years ago by
Madza Farias-Virgens
•
0
1
vote
2
replies
1.0k
views
2.4 years ago
Madza Farias-Virgens
•
0
2
votes
2
replies
887
views
updated 2.5 years ago by
Hervé Pagès
16k
•
written 2.5 years ago by
mahshaaban
•
0
5
votes
2
replies
1.1k
views
0
votes
1
reply
1.0k
views
updated 2.7 years ago by
James W. MacDonald
65k
•
written 2.7 years ago by
soda
▴
80
1
vote
4
replies
1.4k
views
2.7 years ago
A.J.
▴
20
1
vote
3
replies
1.1k
views
2.7 years ago
A.J.
▴
20
0
votes
0
replies
814
views
0
votes
0
replies
796
views
3.0 years ago
António Miguel de Jesus Domingues
▴
490
0
votes
5
replies
2.7k
views
3.1 years ago
sieminsk
•
0
2
votes
2
replies
1.7k
views
0
votes
6
replies
1.2k
views
3.2 years ago
rproendo
▴
20
0
votes
3
replies
1.1k
views
updated 2.5 years ago by
fabian.grammes
•
0
•
written 3.5 years ago by
k.vitting.seerup
▴
120
0
votes
2
replies
3.1k
views
updated 3.5 years ago by
Michael Love
41k
•
written 3.5 years ago by
m93
•
0
0
votes
1
reply
699
views
updated 3.2 years ago by
hauken_heyken
▴
80
•
written 3.5 years ago by
lvclark
▴
10
0
votes
1
reply
4.4k
views
updated 3.7 years ago by
James W. MacDonald
65k
•
written 3.7 years ago by
Jake
▴
90
3
votes
7
replies
1.5k
views
updated 3.7 years ago by
James W. MacDonald
65k
•
written 3.7 years ago by
vanbelj
▴
30
0
votes
1
reply
1.2k
views
updated 3.7 years ago by
shepherl
3.8k
•
written 3.7 years ago by
anze.zupanic
•
0
3
votes
6
replies
1.9k
views
updated 3.8 years ago by
Martin Morgan
25k
•
written 3.8 years ago by
Brian Smith
▴
120
0
votes
1
reply
1.2k
views
updated 3.9 years ago by
James W. MacDonald
65k
•
written 3.9 years ago by
ribioinfo
▴
100
0
votes
2
replies
1.0k
views
updated 4.0 years ago by
Michael Lawrence
★
11k
•
written 4.0 years ago by
mar.pieraccioli
▴
10
0
votes
0
replies
956
views
0
votes
2
replies
798
views
updated 4.0 years ago by
James W. MacDonald
65k
•
written 4.0 years ago by
sjmonkley
▴
40
2
votes
3
replies
1.7k
views
updated 4.1 years ago by
James W. MacDonald
65k
•
written 4.1 years ago by
foehn
▴
100
3
votes
4
replies
1.1k
views
updated 4.1 years ago by
Hervé Pagès
16k
•
written 4.1 years ago by
Guandong Shang
▴
40
1
vote
2
replies
881
views
updated 4.2 years ago by
Steve Lianoglou
★
13k
•
written 4.2 years ago by
aush
▴
40
0
votes
0
replies
907
views
updated 4.2 years ago by
shepherl
3.8k
•
written 4.2 years ago by
domenick.braccia
•
0
0
votes
2
replies
974
views
updated 4.2 years ago by
James W. MacDonald
65k
•
written 4.2 years ago by
ksomi47
•
0
8
votes
12
replies
5.5k
views
2
votes
3
replies
1.1k
views
updated 4.3 years ago by
James W. MacDonald
65k
•
written 4.3 years ago by
vanbelj
▴
30
0
votes
3
replies
934
views
updated 4.4 years ago by
Michael Lawrence
★
11k
•
written 4.4 years ago by
Jake
▴
90
0
votes
8
replies
1.6k
views
updated 4.5 years ago by
Hervé Pagès
16k
•
written 4.5 years ago by
Jiping Wang
▴
90
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Awards
• All
Locations
• All
United States, 2 minutes ago
United States, 2 minutes ago
France, 5 minutes ago
EMBL Heidelberg, 11 minutes ago
United States, 14 minutes ago
United States, 2 minutes ago
United States, 2 minutes ago
France, 5 minutes ago
EMBL Heidelberg, 11 minutes ago
United States, 14 minutes ago
Traffic: 1094 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6